View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14460_high_7 (Length: 485)
Name: NF14460_high_7
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 302676 - 303128
Alignment:
| Q |
18 |
aatttgaagcaggaattggcatcttttatttctagaattaacttttagccttgaatgtatcgttcaatccgctcttacatggacgaatccaaacataaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
302676 |
aatttgaagcaggaattggcatcttttatttctagaattaacttttagccttgaatgtatcgttcaatccactcttacatggaggaattcaaacataaat |
302775 |
T |
|
| Q |
118 |
tactttacataactgaattttaaccgatgtcaattttacaaatctaattcattcaaaatcaatgtttgtcaccactgaataattaatttgttatcttttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
302776 |
tactttacataactgaattttaaccgatgtcaattttacaaatctaattcattcaaaatcaatgtttgtcaccactgaataattaatttgttatcttttg |
302875 |
T |
|
| Q |
218 |
agcaggttgggcgcataccattcgatgaacaacttagaaactttgagaatacattgaatcaacttactggaaatcttggagcagataatatggccacaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
302876 |
agcaggttgggcgcataccattcgatgaacaacttagaaactttgagaatacattgaatcaacttactggaaatcttggagcagataatatggccacaca |
302975 |
T |
|
| Q |
318 |
actatcaaggtgcatattctttgttggaatgggaagcaatgactacctaaacaactaccttatgcctaattataacaccaaaaatcagtacaatggacaa |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
302976 |
actatcaagatgcatattctttgttggaatgggaagcaatgattacctaaacaactaccttatgcctaattataacaccaaaaatcagtacaatggacaa |
303075 |
T |
|
| Q |
418 |
cagtatgctgatctcttggttcaaacatataaccaccagctcactgtaagatc |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
303076 |
cagtatgctgatctcttggttcaaacatataaccaccaactcactgtaagatc |
303128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 10055030 - 10054968
Alignment:
| Q |
128 |
aactgaattttaaccgatgtcaattttacaaatctaattcattcaaaatcaatgtttgtcacc |
190 |
Q |
| |
|
|||| ||||||||| || ||||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
10055030 |
aactcaattttaactaatatcaattttacaaaaccaattcattcaaaatcaacttttgtcacc |
10054968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 7630543 - 7630583
Alignment:
| Q |
147 |
tcaattttacaaatctaattcattcaaaatcaatgtttgtc |
187 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7630543 |
tcaattttacaaaatcaattcattcaaaatcaatgtttgtc |
7630583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University