View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14460_high_9 (Length: 424)

Name: NF14460_high_9
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14460_high_9
NF14460_high_9
[»] chr3 (11 HSPs)
chr3 (20-382)||(5155051-5155416)
chr3 (54-181)||(46490019-46490146)
chr3 (54-250)||(46469608-46469804)
chr3 (54-249)||(4582498-4582693)
chr3 (54-264)||(46478194-46478404)
chr3 (67-181)||(46497336-46497450)
chr3 (54-140)||(47398314-47398400)
chr3 (41-170)||(45900894-45901023)
chr3 (80-242)||(16023873-16024035)
chr3 (54-135)||(47414958-47415039)
chr3 (81-176)||(46507147-46507245)
[»] chr2 (3 HSPs)
chr2 (81-269)||(20154323-20154511)
chr2 (80-268)||(20143419-20143607)
chr2 (80-264)||(20169903-20170087)
[»] chr4 (4 HSPs)
chr4 (54-207)||(35160480-35160633)
chr4 (80-181)||(15555057-15555158)
chr4 (68-176)||(37147405-37147513)
chr4 (79-212)||(35154084-35154217)
[»] chr8 (3 HSPs)
chr8 (80-211)||(9677662-9677793)
chr8 (80-270)||(9693403-9693596)
chr8 (31-137)||(21465916-21466022)
[»] chr6 (1 HSPs)
chr6 (54-181)||(16967864-16967991)
[»] chr7 (2 HSPs)
chr7 (67-127)||(17734557-17734617)
chr7 (67-131)||(17743793-17743857)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 5155416 - 5155051
Alignment:
Q  20 agagcacgacagaaacaagttgagaggcaagatcgttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  5155416 agagcacgacagaaacaagttgagaggcaagatcgttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcaga 5155317  T
Q  120 gccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgatgcgtagg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5155316 gccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttgtctaattctttcaagaacagatgtttggcgatgcgtagg 5155217  T
Q  220 gaaacattagtttggttggtaattgattcacagagagccattgttc---ttctttctcgattaagaccaaagactatggctttaaatagaggtttgaata 316  Q
    |||||||| ||||||||||| |||||||||  ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5155216 gaaacatttgtttggttggtgattgattcatggagagccattgttctttttctttctcgattaagaccaaagactatggctttaaatagaggtttgaata 5155117  T
Q  317 tcctgagctgcaagaaataacatactattaaagccttataatctattgcgatggtttgttttatat 382  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5155116 tcctacgctgcaagaaataacatactattaaagccttataatctattgcgatggtttgttttatat 5155051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 46490146 - 46490019
Alignment:
Q  54 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 153  Q
    |||||| || || ||||| ||||| ||||||||||| |||||||| ||||||||||  || ||||||||||||||||||||||| ||||||||||| ||     
T  46490146 gttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatgatgctgagtacaacttggagc 46490047  T
Q  154 gacagtggcgaaaacacaatgttcttgt 181  Q
    || |||||||| ||||||||||||||||    
T  46490046 gaaagtggcgataacacaatgttcttgt 46490019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 46469804 - 46469608
Alignment:
Q  54 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 153  Q
    ||||||||||||  ||||||| ||  ||||||| |||||||| || ||||||||  ||||||||||| |||||||||  ||| | || | |||||| ||     
T  46469804 gttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagcagcgacaatgttgagcataacttggagt 46469705  T
Q  154 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcac 250  Q
    ||||| ||||||||||||| |||||||| | |||||||  |||| ||||||||||| |||   |||||||| || ||||||||||| ||||||||||    
T  46469704 gacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggccatgttaagggaaactttggtttggttggtgattgattcac 46469608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 249
Target Start/End: Original strand, 4582498 - 4582693
Alignment:
Q  54 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 153  Q
    ||||||||| ||||| ||||| ||  | ||||||||||||||||| | |  |||||| || ||||||||||||||||| ||||| ||  ||||||| ||     
T  4582498 gttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagc 4582597  T
Q  154 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattca 249  Q
    || ||||| ||||||||||||||||| | | |||||||  |||| |||| ||||||||| |  |||||||| || |||||||| || |||||||||    
T  4582598 gaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgattgattca 4582693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 264
Target Start/End: Complemental strand, 46478404 - 46478194
Alignment:
Q  54 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 153  Q
    ||||||||| || |||||||| || || ||||||| || ||| || ||||| |||||||||||||| |||| |||||| || ||||| |||||||| ||     
T  46478404 gttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaacttggagt 46478305  T
Q  154 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcacaga 253  Q
    || ||||| |||||||| ||||| |||| | |||||||  |||| |||||||| || | ||  || || || || ||||||||||  ||||||||||  |    
T  46478304 gaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgttttgcaacgctgagtgatacgttggtttggttggctattgattcacgaa 46478205  T
Q  254 gagccattgtt 264  Q
    || ||||||||    
T  46478204 gatccattgtt 46478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 46497450 - 46497336
Alignment:
Q  67 gtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaa 166  Q
    |||||||| || |||||||||| |||||| || ||||||||||| ||||| ||||||| ||||||||||||||| |||||||| || || ||||| || |    
T  46497450 gtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgatgatgcttagcacaacttgtagtgaaagtggagata 46497351  T
Q  167 acacaatgttcttgt 181  Q
    |||| || |||||||    
T  46497350 acaccatattcttgt 46497336  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 47398314 - 47398400
Alignment:
Q  54 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttag 140  Q
    ||||||||| |||||||| || |||   ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||    
T  47398314 gttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgatgcttag 47398400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 45901023 - 45900894
Alignment:
Q  41 gagaggcaagatcgttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttag 140  Q
    ||||||||| |  |||||||||||| ||||||| | | |||||||||| || |||||| |||||||| ||||||||||  |||||||| |||||||| ||    
T  45901023 gagaggcaaaagagttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgag 45900924  T
Q  141 tacaacttgaagagacagtggcgaaaacac 170  Q
     | |||||| || || ||||| ||||||||    
T  45900923 aataacttggagcgagagtggagaaaacac 45900894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 242
Target Start/End: Complemental strand, 16024035 - 16023873
Alignment:
Q  80 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 179  Q
    ||||||||| ||||||||| |||||||| || ||||| || ||||||||||| | ||| || ||||||||||| || || || |||||||  ||||| ||    
T  16024035 ggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaacatgatgttatt 16023936  T
Q  180 gtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaat 242  Q
    || | ||| |||  | || ||||||||| |||||   ||||| || || ||||||||||||||    
T  16023935 gtctgattgttttgaaaagagatgtttgacgatgttgagggatacgttggtttggttggtaat 16023873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 47414958 - 47415039
Alignment:
Q  54 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatg 135  Q
    ||||||||| ||| ||||||| ||   |||||||||||||||||  || ||||||| ||||||||||||||| || ||||||    
T  47414958 gttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagccagccgcaatgatg 47415039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 46507147 - 46507245
Alignment:
Q  81 gaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcg---atgatgcttagtacaacttgaagagacagtggcgaaaacacaatgtt 176  Q
    ||||||||| |||| ||| ||||| ||||||||||||||||| ||||||   |||||||| || | ||||||||  || ||||| ||||||| ||||||    
T  46507147 gaggaagtcaagaatctgttgttgagtgggaccctcagagccggcagcgattatgatgctgagaataacttgaatcgagagtggtgaaaacataatgtt 46507245  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 81 - 269
Target Start/End: Complemental strand, 20154511 - 20154323
Alignment:
Q  81 gaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttg 180  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||| ||| ||| |  |||||||| || |||| ||||||||||||||||||||||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttg 20154412  T
Q  181 tgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcacagagagccattgttcttct 269  Q
    | | ||| |||||||||||||||||||||||||   ||| |||| ||  |||||||||| ||||||||   |||||||| |||||||||    
T  20154411 tctgattgtttcaagaacagatgtttggcgatgtcgaggaaaacctttatttggttggtgattgattcttggagagccactgttcttct 20154323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 268
Target Start/End: Complemental strand, 20143607 - 20143419
Alignment:
Q  80 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 179  Q
    |||||||||||| ||| || |||||||||||| | ||||| ||||||||||| | ||| || |||| ||| || || |||||||||||||| ||||||||    
T  20143607 ggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaatttggagtgatagtggcgaaaacacgatgttctt 20143508  T
Q  180 gtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcacagagagccattgttcttc 268  Q
    || | ||| |||||| ||||||||| ||||||||   |||||||| || |||||||| || ||||||||    ||||||||||||||||    
T  20143507 gtctgattgtttcaacaacagatgtctggcgatgtcgagggaaacctttgtttggttagtgattgattcttgaagagccattgttcttc 20143419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 264
Target Start/End: Original strand, 20169903 - 20170087
Alignment:
Q  80 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 179  Q
    |||||||||||| ||| || |||| ||||||||| ||||| |||| ||| || | ||| || |||| |||||| || ||||| |||||||| | ||| ||    
T  20169903 ggaggaagtcgacaagttgttgttttgtgggaccttcagaaccagtagcaataaggctgagcacaatttgaagtgatagtggtgaaaacacgacgttttt 20170002  T
Q  180 gtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcacagagagccattgtt 264  Q
    || | ||| |||||| ||||||||| |||| |||   |||||||| || |||||||| || ||||||||   |||||||||||||    
T  20170003 gtctgattgtttcaacaacagatgtctggccatgtcgagggaaacctttgtttggttagtgattgattcttggagagccattgtt 20170087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 207
Target Start/End: Complemental strand, 35160633 - 35160480
Alignment:
Q  54 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 153  Q
    ||||||||| |||||||||||  |  |||||||||| |||||||| |||||||| | ||||||||||||||||| ||| ||||| || |||||||| |||    
T  35160633 gttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttggaga 35160534  T
Q  154 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttg 207  Q
    |||| |||||||||||| |||||||| | | |||||||  |||| |||||||||    
T  35160533 gacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttg 35160480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 15555158 - 15555057
Alignment:
Q  80 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 179  Q
    |||||||||||||||| || || ||||||| ||||||||||||||||||||||||||| || | ||||||||  || || || |||||||||||||| ||    
T  15555158 ggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgagaataacttgaatcgagagaggtgaaaacacaatgttgtt 15555059  T
Q  180 gt 181  Q
    ||    
T  15555058 gt 15555057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 37147513 - 37147405
Alignment:
Q  68 tggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaa 167  Q
    |||||||| | | ||||||||||||||  || ||||||||||||||||  |||||||||||||| || ||||| |||||||| || ||||  ||||||||    
T  37147513 tggatttaaagtcgaggaagtcgagaatttgttgttgtgtgggacccttggagccagcagcgataatacttagaacaacttggagcgacaagggcgaaaa 37147414  T
Q  168 cacaatgtt 176  Q
    |||||||||    
T  37147413 cacaatgtt 37147405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 35154217 - 35154084
Alignment:
Q  79 tggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttct 178  Q
    |||||||||| ||||||||| ||| |||||| ||| ||||||||||||||||||||    || || ||||| |||||||  ||||||||||| || ||||    
T  35154217 tggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaagcactacttggagagacaaaggcgaaaacacgatattct 35154118  T
Q  179 tgtgtaattctttcaagaacagatgtttggcgat 212  Q
    | | | |||| ||  |||| ||||||||||||||    
T  35154117 tttctgattcctttgagaaaagatgtttggcgat 35154084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 9677662 - 9677793
Alignment:
Q  80 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 179  Q
    ||||||||||||||||||| ||||| || |||||||||||||||||||||||||| || || |||||||| ||||||| ||| ||||| || | ||| ||    
T  9677662 ggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgtt 9677761  T
Q  180 gtgtaattctttcaagaacagatgtttggcga 211  Q
    || | |||||||  |||| |||||||||||||    
T  9677762 gtctgattcttttgagaagagatgtttggcga 9677793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 270
Target Start/End: Original strand, 9693403 - 9693596
Alignment:
Q  80 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 179  Q
    |||||||||| |||||||| ||||| || ||||| ||||||||| ||||||||||||| || |||||||| ||||||| ||| ||||| || |  |||||    
T  9693403 ggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattctt 9693502  T
Q  180 gtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattca-ca--gagagccattgttcttctt 270  Q
    || | |||||||  |||| |||||||||||||||   |||||||  || | |||||||||  |||||||| ||  | |||||||||||||||||    
T  9693503 gtctgattcttttgagaagagatgtttggcgatggtgagggaaaatttcgcttggttggtgcttgattcatcaaggtgagccattgttcttctt 9693596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 21465916 - 21466022
Alignment:
Q  31 gaaacaagttgagaggcaagatcgttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcga 130  Q
    |||||||| ||||||||||  | ||| ||||  |||||||| || || ||||||||   |||||| || |||||||| ||||| ||||||||||||||||    
T  21465916 gaaacaagctgagaggcaaagtagtttagattttcagtggacttggattggaggaatgagagaagttgttgttgtgtcggaccttcagagccagcagcga 21466015  T
Q  131 tgatgct 137  Q
    |||||||    
T  21466016 tgatgct 21466022  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 16967864 - 16967991
Alignment:
Q  54 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 153  Q
    ||||||||| ||  ||||||| || |||||||| | || ||| || ||||| |||||||||||||| |||  |||||| |||||||  |||||||| ||     
T  16967864 gttgagatgatcgatggatttggattggaggaatttgaaaagttgttgttgagtgggaccctcagaaccaaaagcgattatgcttaacacaacttggagt 16967963  T
Q  154 gacagtggcgaaaacacaatgttcttgt 181  Q
    || ||||| |||||||| ||||| ||||    
T  16967964 gagagtggtgaaaacacgatgttgttgt 16967991  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 17734617 - 17734557
Alignment:
Q  67 gtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcag 127  Q
    ||||||| |||||||||||||  |||||| |||| ||||||||||||||| ||||| ||||    
T  17734617 gtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggcag 17734557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 17743857 - 17743793
Alignment:
Q  67 gtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgat 131  Q
    ||||||| |||||||||||||  |||||| |||| ||||||||||||||| ||||| | ||||||    
T  17743857 gtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgat 17743793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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