View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_low_1 (Length: 636)
Name: NF14460_low_1
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 624
Target Start/End: Original strand, 23861789 - 23862389
Alignment:
| Q |
21 |
ggaccaaacaatggaaatcattaaatgtgttcacatttttgtcnnnnnnnnnnnnnnttaattgtgttcatatgtatatatacgtgggaacaatctagac |
120 |
Q |
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| T |
23861789 |
ggaccaaacaatggaaatcattaaatgtgttcacatttttgtcaaaaaaaaaaaa--ttaattgtgttcatatgtatatatacgtgggaacaatctagac |
23861886 |
T |
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| Q |
121 |
cgttgagaattgctgtcatattgccttaacaacaaaaatagaatagaatctgtataatgtaatgaatcaatatactttaatgaaacacatcaatgtattt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23861887 |
cgttgagaattgctgtcatattgccttaacaacaaaaatagaatagaatctgtataatgtaatgaatcaatatactttaatgaaacacatcaatgtattt |
23861986 |
T |
|
| Q |
221 |
acatgggagctaattctctcctgtaactcgagagtccaatgagatataagccatttatttttcactactccatgtgggaccctcaatattgaagtaattg |
320 |
Q |
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||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||| |
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| T |
23861987 |
acatgggagctgattctctcctgtgatcggagagtccaatgagatctaagccatttattttctactactccatgtggg-ccttcaatattgaagtaattg |
23862085 |
T |
|
| Q |
321 |
aatggtatagatgtccaccgcattctctccattgaaaatttcacaggaggggatttgcacccgtatttacatactccttttacacaataaatcttgttcg |
420 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
23862086 |
aatggtat-------------attctctccattgaaaatttcactggaggggatttgcacccgtatttacatactccttttatacaataaatcttgtttg |
23862172 |
T |
|
| Q |
421 |
ggtaaaatgaaatttattctatgtttggagcaattgattttttactaatttgaaaatcttttactctaaaatctcaaaatcacaaaaatatactccaacc |
520 |
Q |
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| T |
23862173 |
ggtagaatgagatttattctatgtttggagaaattaattttttaccaatttgaaaatcttttacactaaaatctcaaaatcacaaaaatatactccaacc |
23862272 |
T |
|
| Q |
521 |
actatatgatcacctccgac-------------cactctaatggaacctccaaccatcgcggccacctgatcgtcaataaccatgtgacgaacaccactc |
607 |
Q |
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| T |
23862273 |
actatatgatcacctccgaccaccgccgacgagcactctaatggcacctccaaccatcgcggccacctgatcgtcaataaccatgtgacgaacaccactc |
23862372 |
T |
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| Q |
608 |
caaccatcaatgatgat |
624 |
Q |
| |
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||||||||||||||||| |
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| T |
23862373 |
caaccatcaatgatgat |
23862389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 233 - 364
Target Start/End: Complemental strand, 31228539 - 31228408
Alignment:
| Q |
233 |
attctctcctgtaactcgagagtccaatgagatataagccatttatttttcactactccatgtgggaccctcaatattgaagtaattgaatggtatagat |
332 |
Q |
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| T |
31228539 |
attctctcttgtgattggagagtccagtgagatctaagccatttattttctactactccatgtggagccctcaacgttgaagtaattgaatggtattgat |
31228440 |
T |
|
| Q |
333 |
gtccaccgcattctctccattgaaaatttcac |
364 |
Q |
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| T |
31228439 |
gtccaccgcactctctccattgaaaatttcac |
31228408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 23865427 - 23865468
Alignment:
| Q |
145 |
cttaacaacaaaaatagaatagaatctgtataatgtaatgaa |
186 |
Q |
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| T |
23865427 |
cttaacaacaaaaatagaatagaatcagtataatttaatgaa |
23865468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 223 - 382
Target Start/End: Complemental strand, 7256868 - 7256709
Alignment:
| Q |
223 |
atgggagctaattctctcctgtaactcgagagtccaatgagatataagccatttatttttcactactccatgtgggaccctcaatattgaagtaattgaa |
322 |
Q |
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||||||||| || ||||||| | || ||||||||| |||||| ||||||||||||||| ||||||| |||| | ||||||| ||||||||||||||| |
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| T |
7256868 |
atgggagctgatgctctcctctgacgggagagtccagtgagatctaagccatttattttccactacttcatgggatgccctcaacattgaagtaattgaa |
7256769 |
T |
|
| Q |
323 |
tggtatagatgtccaccgcattctctccattgaaaatttcacaggaggggatttgcaccc |
382 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||| |
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| T |
7256768 |
tggtatagatgtccactgcactctctccattgaaaatttcactagaggggatatgcaccc |
7256709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 226 - 390
Target Start/End: Complemental strand, 12257133 - 12256969
Alignment:
| Q |
226 |
ggagctaattctctcctgtaactcgagagtccaatgagatataagccatttatttttcactactccatgtgggaccctcaatattgaagtaattgaatgg |
325 |
Q |
| |
|
|||| |||||||||| ||| | | |||| |||||||||| ||| ||||||||||||||||| | ||| || |||||| |||||||||||||||| || |
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| T |
12257133 |
ggagttaattctctcatgtgattggagaagccaatgagatctaaaccatttatttttcactatttcatacggagccctcactattgaagtaattgaaagg |
12257034 |
T |
|
| Q |
326 |
tatagatgtccaccgcattctctccattgaaaatttcacaggaggggatttgcacccgtatttac |
390 |
Q |
| |
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||| |||||||| ||| | ||||||||||||||||||| ||||||||| |||||||||| |||| |
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| T |
12257033 |
tattgatgtccagtgcactttctccattgaaaatttcaccggaggggatctgcacccgtaattac |
12256969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 34605507 - 34605422
Alignment:
| Q |
253 |
agtccaatgagatataagccatttatttttcactactccatgtgggaccctcaatattgaagtaattgaatggtatagatgtccac |
338 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||||| | | | ||||||||||||||||||||| |||| ||||||||| |
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| T |
34605507 |
agtccaatgagatctaagtcacttatttttcactactccatacagaatcttcaatattgaagtaattgaatagtattgatgtccac |
34605422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 361
Target Start/End: Original strand, 8533771 - 8533908
Alignment:
| Q |
224 |
tgggagctaattctctcctgtaactcgagagtccaatgagatataagccatttatttttcactactccatgtgggaccctcaatattgaagtaattgaat |
323 |
Q |
| |
|
||||||| |||||||| ||||||| |||||| ||||||||| ||||||||||||||| ||||||||| || || || |||| |||||||||||||||| |
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| T |
8533771 |
tgggagcagattctctcatgtaacttgagagttcaatgagatctaagccatttattttccactactccgtgcggagccttcaacattgaagtaattgaat |
8533870 |
T |
|
| Q |
324 |
ggtatagatgtccaccgcattctctccattgaaaattt |
361 |
Q |
| |
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||||| |||| ||| || |||||||||||||||||| |
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| T |
8533871 |
ggtattaatgttcactacactctctccattgaaaattt |
8533908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 267 - 381
Target Start/End: Original strand, 34639607 - 34639721
Alignment:
| Q |
267 |
taagccatttatttttcactactccatgtgggaccctcaatattgaagtaattgaatggtatagatgtccaccgcattctctccattgaaaatttcacag |
366 |
Q |
| |
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||||||||||||||||||||||||||||| || ||| ||| ||||| ||||||||||||||| ||| ||| || |||||||||| ||||||||| | |
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| T |
34639607 |
taagccatttatttttcactactccatgtagggcccacaacattgatgtaattgaatggtattcatgatcactacacactctccattggaaatttcaccg |
34639706 |
T |
|
| Q |
367 |
gaggggatttgcacc |
381 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
34639707 |
gaggggatctgcacc |
34639721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 227 - 382
Target Start/End: Complemental strand, 16443116 - 16442961
Alignment:
| Q |
227 |
gagctaattctctcctgtaactcgagagtccaatgagatataagccatttatttttcactactccatgtgggaccctcaatattgaagtaattgaatggt |
326 |
Q |
| |
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|||| ||||||||| ||| ||| |||||||| ||| || ||| ||||||||||| ||||||| |||||| || |||||| ||||||| ||||||||| | |
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| T |
16443116 |
gagcaaattctctcatgtgactggagagtccggtgatatctaaaccatttattttccactacttcatgtgagatcctcaacattgaagcaattgaatgat |
16443017 |
T |
|
| Q |
327 |
atagatgtccaccgcattctctccattgaaaatttcacaggaggggatttgcaccc |
382 |
Q |
| |
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|| |||||| || ||| ||||||| || || |||||| || || ||||||||||| |
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|
| T |
16443016 |
attgatgtcaactgcactctctcctttaaatatttcattggcggagatttgcaccc |
16442961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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