View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_low_10 (Length: 419)
Name: NF14460_low_10
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 41138690 - 41138302
Alignment:
| Q |
16 |
ctgataggaagagttaagatcctcttgatttgataaacggagataatcatagc-ctaatagaaaaagttaggattgataatatttaaaaacaccaaaggg |
114 |
Q |
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| T |
41138690 |
ctgatagaaagagttaagatcctcttgatttgataaacggagataatcatagcactaatagaaaaagttaggattgataatatttaaaaacaccaaaggg |
41138591 |
T |
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| Q |
115 |
tatttaggtattttgaaaagggcaagctagggacattagatggggacctcttattatatcaatagttaaaaaa-gaaagaataaagcaataataattccc |
213 |
Q |
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| T |
41138590 |
tatttaggtattttgaaaagggcaagctagggacattagatggggacctcttattatatcaatagttaaaaaaagaaagaataaagcaataataattccc |
41138491 |
T |
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| Q |
214 |
tctccaactcttatttaaaaccttcaatccaacacctcattgaagccaagaaactaagtgctcatatatacaataatttctatctagcatccacattaca |
313 |
Q |
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| T |
41138490 |
cctccaactcttatttaaaaccttcaatccaacacctcattgaagccaagaaactaagtgctcatatatacaataatttctatctagcatccacattaca |
41138391 |
T |
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| Q |
314 |
acaaccaacaacatgacaacattgtcaaattatttctattcactctcacaaactccacacagacttaggaaaagaatgctagcaacatg |
402 |
Q |
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| T |
41138390 |
acaaccaacaacatgacaacattgtcaaattatttctattcactctcacaaactccacacagacttaggaaaagaatgctagcaacatg |
41138302 |
T |
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