View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_low_17 (Length: 311)
Name: NF14460_low_17
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 62 - 291
Target Start/End: Complemental strand, 26315980 - 26315748
Alignment:
| Q |
62 |
ttttgaattgtatcctttctttacgtgcnnnnnnn-gcatgtcttgtgctacgtattgtagtataataaattcttggttttctcaaaaacaaacaaaata |
160 |
Q |
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| T |
26315980 |
ttttgaattgtatcctttctttacgtgcttatatttgcatgtcttgtgctacgtattgcagtataataaattcttggtttttttaaaaacaaacaaaata |
26315881 |
T |
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| Q |
161 |
tttctctgtcaccat--tatggctattattgtagtggttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattag |
258 |
Q |
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||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26315880 |
tttctttgtcaccatattatggctagtattgtagtggttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattag |
26315781 |
T |
|
| Q |
259 |
gtttcaatgatttgttcaatcaactctttccca |
291 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26315780 |
gtttcaatgatttgttcaatcaactctttccca |
26315748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 174 - 283
Target Start/End: Complemental strand, 43110973 - 43110864
Alignment:
| Q |
174 |
attatggctattattgtagtggttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgt |
273 |
Q |
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| T |
43110973 |
attatggctaatattgttgtggtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgt |
43110874 |
T |
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| Q |
274 |
tcaatcaact |
283 |
Q |
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| T |
43110873 |
tcaatgaact |
43110864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 5268904 - 5269000
Alignment:
| Q |
195 |
gttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttccca |
291 |
Q |
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| T |
5268904 |
gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttccca |
5269000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 5249659 - 5249765
Alignment:
| Q |
185 |
tattgtagtggttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactc |
284 |
Q |
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|||||| || ||||| || ||||| |||||||| || || |||||||| ||||| |||||| |||||||||| ||||||| ||||||||||||||| ||| |
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| T |
5249659 |
tattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctc |
5249758 |
T |
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| Q |
285 |
tttccca |
291 |
Q |
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|||||| |
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| T |
5249759 |
cttccca |
5249765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 5276850 - 5276756
Alignment:
| Q |
195 |
gttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcc |
289 |
Q |
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| T |
5276850 |
gtttttgattttgacaaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcc |
5276756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 5272878 - 5272783
Alignment:
| Q |
196 |
ttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttccca |
291 |
Q |
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|||| ||||||||||||||||| || || ||||| || ||||| ||| | |||||||||| ||||||| |||||||||||||| ||| |||||| |
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| T |
5272878 |
tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttccca |
5272783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 19569168 - 19569227
Alignment:
| Q |
225 |
tgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactc |
284 |
Q |
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||||| || ||||| |||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
19569168 |
tgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactc |
19569227 |
T |
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