View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_low_23 (Length: 256)
Name: NF14460_low_23
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 13887083 - 13886941
Alignment:
| Q |
14 |
tcatcaacatgttgacaaataatcatttg-taaggc-tgagagagtattaaatttggtgatatgcttcataaaccccttacttaaaatacggtactaacc |
111 |
Q |
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| T |
13887083 |
tcatcaacatgttgagaaataatcattagctgaggcctgagagagtattaaatttggtgatatgcttcagaaaccccttacttaaaatacggtactaacc |
13886984 |
T |
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| Q |
112 |
aaaaagtcattcttaggtattcaacaaacacatggagaatata |
154 |
Q |
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| T |
13886983 |
aaaaagtcattcttaggtattcaacaaacacatggagaatata |
13886941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 13886904 - 13886819
Alignment:
| Q |
152 |
atagaagctagcaaagaagatgagaatccacaacactaccaatgaaacttt--actcatttatacaaattccactacatttttcct |
235 |
Q |
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| T |
13886904 |
atagaagttagcaaagaagatgagaatccagaacagcaccaatgaaactttttactcatttatacaaattccactacatttttcct |
13886819 |
T |
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