View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14460_low_24 (Length: 250)
Name: NF14460_low_24
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 1206288 - 1206505
Alignment:
| Q |
16 |
ataatcataaataataaaataaaaaccaccaaccagaatcatgatcttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1206288 |
ataatcataaataataaaataaaaaccaccaaccagaatcatgatcttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgta |
1206387 |
T |
|
| Q |
116 |
ggcgttgaatcctaaatgtttatgcctttaagtacctcattcgccctttctttgaattcttgaacttgaaatatgatgatttgataatcattcatgcagg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1206388 |
ggcgttgaatcctaaatgtttatgcctttaagtacctcattcgccctttgtttgaattcttgaacttgaaatatgatgatttgataatcattcatgcagg |
1206487 |
T |
|
| Q |
216 |
tcttgaaatcatttatgt |
233 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1206488 |
tcttgaaatcatttatgt |
1206505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 30865206 - 30865370
Alignment:
| Q |
79 |
ctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcc------taaatgtttatg-cctttaagtacctcattcgccctttctttgaa |
171 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||| ||||||||| ||||||||| || ||||| ||||| |||||| || ||| || ||| |
|
|
| T |
30865206 |
ctgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatgtttctggcctttgagtacatcattcaccttttgttagaa |
30865305 |
T |
|
| Q |
172 |
ttcttgaacttgaaatatgatgatttgataatca---ttcatgcaggtcttgaaatcatttatgt |
233 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||| |||||||||||||||||||||| ||||| |
|
|
| T |
30865306 |
ttcttgaactggaagtatgatgatttgatgatcattcttcatgcaggtcttgaaatcatctatgt |
30865370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 232
Target Start/End: Complemental strand, 3045776 - 3045599
Alignment:
| Q |
62 |
ttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcctaaa------tgtttatgcc-tttaagtacctca |
154 |
Q |
| |
|
|||||| | |||||| |||||||||| |||||||| || || ||||||||||||| |||||||||||| | |||||||| |||||||||||| |
|
|
| T |
3045776 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccctttaagtacctcg |
3045677 |
T |
|
| Q |
155 |
ttcgccctttctttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaatcatttatg |
232 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||| || ||| |||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
3045676 |
ttcaccctttctttgaactcttgaactggaagtacgattggatgatgatccttcatgcaggtcttgaaatcatctatg |
3045599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University