View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_low_25 (Length: 250)
Name: NF14460_low_25
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_low_25 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 4121819 - 4121592
Alignment:
| Q |
23 |
tcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttatttgatgcttgcattgagaattgtcattc |
122 |
Q |
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| T |
4121819 |
tcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttatttgatgcttgcattgagaattgtcattc |
4121720 |
T |
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| Q |
123 |
ttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttctgggggtaagctctagaactgtttgagagtttgta |
222 |
Q |
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| T |
4121719 |
ttttcatttctattttagatttgtggattttggttttgttggctaatgtaggagatttctctttctgggggtaagctctagaactgtttgagagtttgta |
4121620 |
T |
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| Q |
223 |
cccttgatgttgagcacaagagcatcct |
250 |
Q |
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| T |
4121619 |
cccttgatgttgagcataagagcatcct |
4121592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 4347133 - 4347224
Alignment:
| Q |
97 |
gatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttct |
188 |
Q |
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| T |
4347133 |
gatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttggttttgctggctagtgtaggagatttctctttct |
4347224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 18151805 - 18151876
Alignment:
| Q |
23 |
tcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttat |
94 |
Q |
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| T |
18151805 |
tcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttat |
18151876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 4118762 - 4118662
Alignment:
| Q |
97 |
gatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttctgggggtaa |
196 |
Q |
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| T |
4118762 |
gatgcttgcattaagatttgtcactcttttcctttctattttttatttatggaatttagttttgttgggcagtgtaggagatttctctttctgggtgtaa |
4118663 |
T |
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| Q |
197 |
g |
197 |
Q |
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| T |
4118662 |
g |
4118662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 4363559 - 4363650
Alignment:
| Q |
97 |
gatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttct |
188 |
Q |
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| T |
4363559 |
gatgcttgcattgagaattgtcattcttttcctttctatttatgattggtgtgatttggttttgctggctggtgtaggagatttccctttct |
4363650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 4131589 - 4131534
Alignment:
| Q |
105 |
cattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttg |
160 |
Q |
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| T |
4131589 |
cattgagaattgtcattcttttcctttctatttttgattggtggaatttggttttg |
4131534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 28372585 - 28372514
Alignment:
| Q |
23 |
tcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttat |
94 |
Q |
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| T |
28372585 |
tcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttat |
28372514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 28380407 - 28380336
Alignment:
| Q |
23 |
tcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttat |
94 |
Q |
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| T |
28380407 |
tcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttat |
28380336 |
T |
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