View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14460_low_3 (Length: 582)
Name: NF14460_low_3
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_low_3 |
 | |
|
| [»] scaffold0528 (1 HSPs) |
| | |
|
| [»] scaffold0287 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 10 - 570
Target Start/End: Complemental strand, 31039719 - 31039159
Alignment:
| Q |
10 |
tgtgcagggaaaggttttatagaggaagaagatgtcgaaaagcttccatatttcaaggccgttataaaagaatcaatgagattgtacccaattttgccta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31039719 |
tgtgcagggaaaggttttatagaggaagaagatgtcgaaaagcttccatatttcaaggccgttataaaagaatcgatgagattgtacccaattttgccta |
31039620 |
T |
|
| Q |
110 |
tacttttaccaagagaaacaatgacaaattgcaacattgcagggtacgacattccagacaagacattggtgtacgtgaatgcattggcgatccatagaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039619 |
tacttttaccaagagaaacaatgacaaattgcaacattgcagggtacgacattccagacaagacattggtgtacgtgaatgcattggcgatccatagaga |
31039520 |
T |
|
| Q |
210 |
cccagaagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattccgtttggt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039519 |
cccagaagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattccgtttggt |
31039420 |
T |
|
| Q |
310 |
tctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgacctcgtactttctaatcttctctattcatttgactgggaaatgcctgaag |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039419 |
tctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgactgggaaatgcctgaag |
31039320 |
T |
|
| Q |
410 |
gagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039319 |
gagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgt |
31039220 |
T |
|
| Q |
510 |
gtgatcttcaacttgcatgttatgctatatttatgtgaagaaaataaagcatgcatgatga |
570 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039219 |
gtgatcttgaacttgcatgttatgctatatttatgtgaagaaaataaagcatgcatgatga |
31039159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 10 - 532
Target Start/End: Complemental strand, 31053209 - 31052687
Alignment:
| Q |
10 |
tgtgcagggaaaggttttatagaggaagaagatgtcgaaaagcttccatatttcaaggccgttataaaagaatcaatgagattgtacccaattttgccta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31053209 |
tgtgcagggaaaggttttatagaggaagaagatgtcgaaaagcttccatatttcaaggccgttataaaagaatcaatgagattgtacccaattttgccta |
31053110 |
T |
|
| Q |
110 |
tacttttaccaagagaaacaatgacaaattgcaacattgcagggtacgacattccagacaagacattggtgtacgtgaatgcattggcgatccatagaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31053109 |
tacttttaccaagagaaacaatgacaaattgcaacattgcagggtacgacattccagacaagacattggtgtacgtgaatgcattggcgatccatagaga |
31053010 |
T |
|
| Q |
210 |
cccagaagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattccgtttggt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31053009 |
cccagaagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattccgtttggt |
31052910 |
T |
|
| Q |
310 |
tctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgacctcgtactttctaatcttctctattcatttgactgggaaatgcctgaag |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31052909 |
tctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctattcatttgattgggaaatgcctgaag |
31052810 |
T |
|
| Q |
410 |
gagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31052809 |
gagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgt |
31052710 |
T |
|
| Q |
510 |
gtgatcttcaacttgcatgttat |
532 |
Q |
| |
|
|||||||| || ||||||||||| |
|
|
| T |
31052709 |
gtgatcttgaaattgcatgttat |
31052687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 563
Target Start/End: Complemental strand, 31072036 - 31071488
Alignment:
| Q |
15 |
agggaaaggttttatagaggaagaagatgtcgaaaagcttccatatttcaaggccgttataaaagaatcaatgagattgtacccaattttgcctatactt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| || || ||||| |
|
|
| T |
31072036 |
agggaaaggttttatagaggaagaagatgtccaaaagcttccatatttcaaggcagttataaaagaatcaatgagactgtacccgtcattacccgtactt |
31071937 |
T |
|
| Q |
115 |
ttaccaagagaaacaatgacaaattgcaacattgcagggtacgacattccagacaagacattggtgtacgtgaatgcattggcgatccatagagacccag |
214 |
Q |
| |
|
|||||||||||||| |||| ||| ||| |||| | ||||||||| |||||||||||||||||||||||| | || || | ||| ||||||||||| || | |
|
|
| T |
31071936 |
ttaccaagagaaacgatgaaaaagtgcgacatcgaagggtacgaaattccagacaagacattggtgtacattaacgcgtgggcaatccatagagatccgg |
31071837 |
T |
|
| Q |
215 |
aagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattccgtttggttctgg |
314 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| || || |
|
|
| T |
31071836 |
aagcatggaaggatccagaagagttttatccagagagattcataggtagtgatatagatttaaaaggacaagatttcgagctgattccatttggctcggg |
31071737 |
T |
|
| Q |
315 |
gcgaagaatttgccccggcttaaacatggctattgctaccatcgacctcgtactttctaatcttctctattcatttgactgggaaatgcctgaaggagct |
414 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| | ||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
31071736 |
gcgaagagtttgccccggcttaaacatggcaattgctactgtggaccttgtacttgctaatcttctctatttgtttgattgggaaatgcctgaaggagta |
31071637 |
T |
|
| Q |
415 |
aagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgtgtgat |
514 |
Q |
| |
|
||| ||||| | || |||| | |||||| | |||||| ||||||||||||||||||||||||| ||| ||||||||||| | |||||||| || |||| |
|
|
| T |
31071636 |
aagtgggaaaatatagacattgatggtcttccaggacttgttcaacacaagaaaaatcctctctgccttattgctaagaagaggattgaatgtgtttgat |
31071537 |
T |
|
| Q |
515 |
cttcaacttgcatgttatgctatatttatgtgaagaaaataaagcatgc |
563 |
Q |
| |
|
||| || || |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
31071536 |
ctttgtttttcaagttatgttatatttatcctaagaaaataaagcatgc |
31071488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 310 - 570
Target Start/End: Complemental strand, 31048642 - 31048382
Alignment:
| Q |
310 |
tctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgacctcgtactttctaatcttctctattcatttgactgggaaatgcctgaag |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31048642 |
tctgggcgaagaatttgccccggcttaaacatggctattgctaccatcgaccttgtactttctaatcttctctgttcatttgactgggaaatgcctgaag |
31048543 |
T |
|
| Q |
410 |
gagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31048542 |
gagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaagaagcgaattgaatgcgt |
31048443 |
T |
|
| Q |
510 |
gtgatcttcaacttgcatgttatgctatatttatgtgaagaaaataaagcatgcatgatga |
570 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31048442 |
gtgatcttgaacttgcatgttatgctatatttatgtgaagaaaataaagcatgcatgatga |
31048382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 160 - 326
Target Start/End: Complemental strand, 9400383 - 9400217
Alignment:
| Q |
160 |
attccagacaagacattggtgtacgtgaatgcattggcgatccatagagacccagaagtatggaaggatccagaagagttttatccagagagattcatag |
259 |
Q |
| |
|
||||||| |||||| | ||||| |||||||| | ||| || ||||||||| | | || ||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
9400383 |
attccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttag |
9400284 |
T |
|
| Q |
260 |
gaagtgatatagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaagaatttg |
326 |
Q |
| |
|
|||| |||| |||| |||||||| ||||| | ||||| ||||| ||||| ||||||||||| |
|
|
| T |
9400283 |
aaagttctataaattttcttggacaagactttgaatttattccctttggatctggacgaagaatttg |
9400217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 394 - 570
Target Start/End: Original strand, 1 - 177
Alignment:
| Q |
394 |
tgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaaga |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
tgggaaatgcctgaaggagctaagagggaagacattgacactcatggtcaagccggacttattcaacacaagaaaaatcctctctgtcttgttgctaaga |
100 |
T |
|
| Q |
494 |
agcgaattgaatgcgtgtgatcttcaacttgcatgttatgctatatttatgtgaagaaaataaagcatgcatgatga |
570 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
agcgaattgaatgcgtgtgatcttgaacttgcatgttatgctatatttatgtgaagaaaataaagcatgcatgatga |
177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 202 - 329
Target Start/End: Original strand, 15838 - 15965
Alignment:
| Q |
202 |
catagagacccagaagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattc |
301 |
Q |
| |
|
||||| ||||| || | |||||| ||||| || ||||||||||||||||||||| || | |||||||||||| ||||||| ||||||||| |||| | |
|
|
| T |
15838 |
catagggaccccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaatgatatagattttaaaggacgggattttgagttgatac |
15937 |
T |
|
| Q |
302 |
cgtttggttctgggcgaagaatttgccc |
329 |
Q |
| |
|
| |||||| | ||||| ||||||||||| |
|
|
| T |
15938 |
catttggtgcagggcgtagaatttgccc |
15965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 202 - 329
Target Start/End: Complemental strand, 3630247 - 3630120
Alignment:
| Q |
202 |
catagagacccagaagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattc |
301 |
Q |
| |
|
||||| ||||| || | |||||| ||||| || ||||||||||||||||||||| || | |||||||||||| ||||||| ||||||||| |||| | |
|
|
| T |
3630247 |
catagggaccccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaatgatatagattttaaaggacgggattttgagttgatac |
3630148 |
T |
|
| Q |
302 |
cgtttggttctgggcgaagaatttgccc |
329 |
Q |
| |
|
| |||||| | ||||| ||||||||||| |
|
|
| T |
3630147 |
catttggtgcagggcgtagaatttgccc |
3630120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 329
Target Start/End: Complemental strand, 9000274 - 9000105
Alignment:
| Q |
160 |
attccagacaagacattggtgtacgtgaatgcattggcgatccatagagacccagaagtatggaaggatccagaagagttttatccagagagattcatag |
259 |
Q |
| |
|
||||||| ||||||| | |||| |||||||| | ||| || || |||||||| | || ||||| |||||||||| |||||||| || |||||| ||| |
|
|
| T |
9000274 |
attccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccctaatgtttggaaaaatccagaagaattttatcctgaaagattcttag |
9000175 |
T |
|
| Q |
260 |
gaagtgatatagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaagaatttgccc |
329 |
Q |
| |
|
|||| |||| |||| || |||||||||||||| || || || ||||| |||| || ||||||||||| |
|
|
| T |
9000174 |
aaagttctataaattttaatggacaagattttgaactaataccctttggagctggtcgtagaatttgccc |
9000105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 9030920 - 9031026
Alignment:
| Q |
230 |
cagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaagaatttgccc |
329 |
Q |
| |
|
||||||| |||||||| || |||||| ||| |||| |||| |||| | |||||||||||||| || || || ||||| |||| || ||||||||||| |
|
|
| T |
9030920 |
cagaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttggagctggccgtagaatttgccc |
9031019 |
T |
|
| Q |
330 |
cggctta |
336 |
Q |
| |
|
||||||| |
|
|
| T |
9031020 |
cggctta |
9031026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 8900662 - 8900517
Alignment:
| Q |
184 |
gtgaatgcattggcgatccatagagacccagaagtatggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggac |
283 |
Q |
| |
|
|||||||| | ||| || |||| ||||||||| || ||||| | ||||||||||||||||| || ||||| ||| |||| |||| |||| | |||| |
|
|
| T |
8900662 |
gtgaatgcttgggctattcatacagacccagatgtttggaaaaacccagaagagttttatcctgaaagatttttagaaagttctataaatttttatggac |
8900563 |
T |
|
| Q |
284 |
aagattttgagctgattccgtttggttctgggcgaagaatttgccc |
329 |
Q |
| |
|
|||||||||| || ||||| ||||| | || || ||||||||||| |
|
|
| T |
8900562 |
aagattttgaactaattccctttggagccggtcgtagaatttgccc |
8900517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University