View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_low_8 (Length: 462)
Name: NF14460_low_8
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Complemental strand, 4121578 - 4121131
Alignment:
| Q |
13 |
aatatttcgttaaacttcttcccgactgcagctggactatattcgtcggccacaggtttttcctttcttgataataaattttta-------------aaa |
99 |
Q |
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| T |
4121578 |
aatatttcgttaaacttcttcccgactgcagctggactatattcgttggccacaggtttttcctttcttgataataaatttttatattgaatttttaaaa |
4121479 |
T |
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| Q |
100 |
ttttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattgcagatgtacacatcctta |
199 |
Q |
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| T |
4121478 |
ttttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattgcagatgtacacatcctta |
4121379 |
T |
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| Q |
200 |
tcatatcaccaaatttttgaattgtactccgtgactgcgattgtagccacaatgtcagagtttgggaccaccacatcacaacaattgcaattgtgtggca |
299 |
Q |
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| T |
4121378 |
tcatatcaccaaatttttgaattgtactccgtgactgcgattgtagccacaatgtcagagtttgggaccaccacatcacaacaattgcaattgtgtggca |
4121279 |
T |
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| Q |
300 |
tcaactacatttttccacaattttcctcaatatcaaagatcaggtgttattgctagttggcagtcttgtgactgcccccacaatttcaaaccttcgcgtc |
399 |
Q |
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| T |
4121278 |
tcaactacatttttccacaattttcctcaatatcaaagatcaggtgttattgctagttggcagtcttgtgactgcccccacaatttcaaaccttcacgtc |
4121179 |
T |
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| Q |
400 |
tctgctcaggttgtgctcttgtttttgctcaaaattttattatagttg |
447 |
Q |
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| T |
4121178 |
tctgctcaggttgtgctcttgtttttgctcaaaattttattatagttg |
4121131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 150 - 340
Target Start/End: Original strand, 4363879 - 4364075
Alignment:
| Q |
150 |
aaacattgaagagaaagaatcattatccattgcagatgtacacatccttatcatatcaccaaatttttgaattgtactccgtgactgcgattgtagccac |
249 |
Q |
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| T |
4363879 |
aaacattgaagggaaagaaccattgtccattgcagatatatgtatccttatcagatgaccaaagttttaaattgtaatcctcgacttcaattgtagcctc |
4363978 |
T |
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| Q |
250 |
aatgtca--gagtttgggacc----accacatcacaacaattgcaattgtgtggcatcaactacatttttccacaattttcctcaatatcaaagatc |
340 |
Q |
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| T |
4363979 |
aatatcaaggattttgagaccactgaccacatcacaacaatcacaattgtgtcgcatcaacctcatttttcttcagttttccttaacatcaaagatc |
4364075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 4131359 - 4131230
Alignment:
| Q |
99 |
attttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaa---acattgaagagaaagaatcattatccattgcagatgtacacatc |
195 |
Q |
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|||| |||||| ||| || ||||||||||||||| |||||||||| ||| || |||||||||| |||||||||||||||||||||||||| ||| |
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| T |
4131359 |
atttgaactttcatcattttctgcagtaaatttgactttttaaaacctgctaataaacattgaagaaaaagaatcattatccattgcagatgtgtggatc |
4131260 |
T |
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| Q |
196 |
cttatcatatcaccaaatttttgaattgta |
225 |
Q |
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| T |
4131259 |
cttggcatattaccaaagttttaaattgta |
4131230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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