View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14461_high_1 (Length: 745)

Name: NF14461_high_1
Description: NF14461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14461_high_1
NF14461_high_1
[»] chr6 (8 HSPs)
chr6 (340-726)||(24178858-24179244)
chr6 (346-725)||(24188670-24189049)
chr6 (42-341)||(1365645-1365945)
chr6 (396-703)||(24168478-24168785)
chr6 (42-341)||(24337909-24338205)
chr6 (52-334)||(7243319-7243602)
chr6 (408-725)||(24151651-24151980)
chr6 (479-620)||(24112443-24112584)
[»] chr4 (13 HSPs)
chr4 (42-341)||(43034023-43034322)
chr4 (42-341)||(30537524-30537823)
chr4 (41-341)||(50150211-50150509)
chr4 (40-341)||(782793-783095)
chr4 (42-341)||(27627753-27628052)
chr4 (42-341)||(36187319-36187619)
chr4 (42-341)||(3067729-3068026)
chr4 (42-341)||(26877163-26877465)
chr4 (54-341)||(25934341-25934634)
chr4 (155-285)||(33313287-33313417)
chr4 (42-143)||(22651746-22651847)
chr4 (196-251)||(56551518-56551573)
chr4 (64-130)||(29989965-29990031)
[»] chr7 (11 HSPs)
chr7 (39-341)||(24989714-24990016)
chr7 (42-287)||(7568072-7568317)
chr7 (42-293)||(18674552-18674803)
chr7 (54-279)||(45062518-45062743)
chr7 (42-294)||(23319869-23320122)
chr7 (40-341)||(48390211-48390513)
chr7 (165-341)||(8417659-8417835)
chr7 (42-276)||(41850907-41851142)
chr7 (42-343)||(48394055-48394356)
chr7 (57-143)||(8417896-8417982)
chr7 (191-247)||(965166-965222)
[»] chr3 (19 HSPs)
chr3 (42-344)||(54747988-54748290)
chr3 (42-341)||(26848053-26848352)
chr3 (39-341)||(25095892-25096179)
chr3 (42-287)||(48905527-48905772)
chr3 (42-341)||(35612911-35613212)
chr3 (54-341)||(50834007-50834295)
chr3 (54-341)||(50841558-50841846)
chr3 (42-341)||(46320434-46320734)
chr3 (42-341)||(22515639-22515941)
chr3 (57-287)||(9663814-9664041)
chr3 (42-341)||(23026177-23026479)
chr3 (151-339)||(25313366-25313555)
chr3 (42-325)||(20922666-20922951)
chr3 (57-339)||(49794876-49795149)
chr3 (42-114)||(30363802-30363874)
chr3 (45-111)||(25313559-25313625)
chr3 (42-86)||(9663769-9663813)
chr3 (198-243)||(31612861-31612906)
chr3 (196-245)||(33280367-33280416)
[»] chr8 (11 HSPs)
chr8 (42-342)||(13882085-13882384)
chr8 (42-341)||(8669735-8670033)
chr8 (45-332)||(29226286-29226572)
chr8 (42-341)||(32305708-32306008)
chr8 (54-335)||(37533773-37534055)
chr8 (41-336)||(8106899-8107193)
chr8 (51-334)||(35634693-35634977)
chr8 (35-143)||(45177489-45177598)
chr8 (42-290)||(42569953-42570204)
chr8 (169-266)||(36741715-36741815)
chr8 (157-292)||(17855397-17855533)
[»] chr2 (18 HSPs)
chr2 (42-341)||(41435502-41435801)
chr2 (42-341)||(21344974-21345270)
chr2 (42-341)||(39778543-39778845)
chr2 (42-341)||(11964151-11964436)
chr2 (42-287)||(7105608-7105853)
chr2 (42-341)||(22066291-22066568)
chr2 (93-341)||(10448719-10448967)
chr2 (52-341)||(10728196-10728486)
chr2 (42-333)||(25186947-25187238)
chr2 (42-336)||(42993698-42993994)
chr2 (42-341)||(13693423-13693722)
chr2 (42-341)||(19926680-19926978)
chr2 (45-334)||(10700120-10700410)
chr2 (49-336)||(36191475-36191763)
chr2 (42-341)||(28830958-28831257)
chr2 (203-342)||(41462665-41462805)
chr2 (33-130)||(41462845-41462942)
chr2 (42-72)||(10448965-10448995)
[»] chr1 (22 HSPs)
chr1 (42-341)||(16130405-16130707)
chr1 (42-341)||(1553717-1554022)
chr1 (42-341)||(30222693-30222992)
chr1 (52-327)||(35050208-35050483)
chr1 (42-341)||(45192467-45192765)
chr1 (42-341)||(5800331-5800629)
chr1 (42-341)||(16129851-16130157)
chr1 (42-341)||(27654606-27654904)
chr1 (42-341)||(40987961-40988261)
chr1 (109-341)||(27332899-27333131)
chr1 (42-259)||(27846418-27846636)
chr1 (40-344)||(34546647-34546951)
chr1 (161-338)||(9411731-9411909)
chr1 (37-223)||(35428419-35428609)
chr1 (77-290)||(36834287-36834495)
chr1 (42-341)||(4813646-4813945)
chr1 (67-341)||(23933236-23933512)
chr1 (163-341)||(13879068-13879235)
chr1 (219-341)||(35121171-35121293)
chr1 (47-248)||(11907972-11908172)
chr1 (33-114)||(9412284-9412365)
chr1 (42-130)||(35121359-35121446)
[»] chr5 (9 HSPs)
chr5 (42-341)||(33314329-33314628)
chr5 (42-342)||(40385127-40385431)
chr5 (151-345)||(21262900-21263094)
chr5 (42-339)||(41174553-41174851)
chr5 (42-341)||(24868467-24868767)
chr5 (42-338)||(3097441-3097741)
chr5 (42-143)||(21262495-21262596)
chr5 (155-276)||(4237918-4238039)
chr5 (166-329)||(2934905-2935070)
[»] scaffold0067 (1 HSPs)
scaffold0067 (42-341)||(6703-7005)
[»] scaffold0008 (1 HSPs)
scaffold0008 (42-341)||(258218-258509)
[»] scaffold0057 (2 HSPs)
scaffold0057 (42-275)||(30477-30710)
scaffold0057 (64-242)||(30741-30919)


Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 340 - 726
Target Start/End: Original strand, 24178858 - 24179244
Alignment:
Q  340 tactatgtatcttctaattttagctaaatcaagaaacccaaaatttcaatgtccaaaaaccaacccaaacctcttcttccttggaaggtccgcgctacaa 439  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24178858 tactatgtatcttctaattttagctaaatcaaaaaacccaaaatttcaatgtctaaaaaccaacccaaacctcttcttccttggaaggtccgcgctacaa 24178957  T
Q  440 tttcacttcttacagttttaacggacgcttcatgtcgagctaacggtaccgtcaaccgtcgtctctttaacttcttcgatctcaaatcctcacctaacgc 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24178958 tttcacttcttacagttttaacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgc 24179057  T
Q  540 cactcctgttaacggcgtttccaccaaagacgttaccgttaacgccgaaaataacgtttggtttcgtctctttactcccactgttgctggagaagtcacc 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  24179058 cactcctgttaacggcgtttccaccaaagacgttaccgttaacgccgaaaataacgtttggtttcgtctctttacccccactgttgccggagaagtcacc 24179157  T
Q  640 ggagatggtggtgccaccaaaacaacctcccttcctgtagtcattttcttccacggcggtggctacacttttctttctccttcctcg 726  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24179158 ggagatggtggtgccaccaaagcaacctcccttcctgtcgtcattttcttccacggcggtggctacacttttctttctccttcctcg 24179244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 346 - 725
Target Start/End: Original strand, 24188670 - 24189049
Alignment:
Q  346 gtatcttctaattttagctaaatcaagaaacccaaaatttcaatgtccaaaaaccaacccaaacctcttcttccttggaaggtccgcgctacaatttcac 445  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||||||| |||||||||||||||||||||||||||||||||    
T  24188670 gtatcttctaagtttagctaaatcaagaaacccaaaatttcaatgtccacaaataaacccaaacctgttcttccttggaaggtccgcgctacaatttcac 24188769  T
Q  446 ttcttacagttttaacggacgcttcatgtcgagctaacggtaccgtcaaccgtcgtctctttaacttcttcgatctcaaatcctcacctaacgccactcc 545  Q
    |||||||||||||||||||| |||||||||| || ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  24188770 ttcttacagttttaacggactcttcatgtcgcgcaaacggcaccgtcaatcgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactcc 24188869  T
Q  546 tgttaacggcgtttccaccaaagacgttaccgttaacgccgaaaataacgtttggtttcgtctctttactcccactgttgctggagaagtcaccggagat 645  Q
      |||||||||||||||| |||||||| ||||||||| ||||||| ||| ||||||| |||||||||||||| |||||||| ||||||||||||| ||||    
T  24188870 gattaacggcgtttccactaaagacgtcaccgttaactccgaaaacaacctttggttccgtctctttactccaactgttgccggagaagtcaccgaagat 24188969  T
Q  646 ggtggtgccaccaaaacaacctcccttcctgtagtcattttcttccacggcggtggctacacttttctttctccttcctc 725  Q
    |||||| |||||||||| ||||||||||| || ||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  24188970 ggtggttccaccaaaactacctcccttcccgtcgtcattttcttccacggtggtggcttcacttttctttcttcttcctc 24189049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 1365945 - 1365645
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||||||||  || ||||||||||| || |||||||    
T  1365945 tactctctccggtcctttatacaagaaacaaaagacatgaaacatcaggaccaagaaa-tacattgaaaatagttatcttcatttaatacatctctacat 1365847  T
Q  142 ttnnnnnnn-ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||        ||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1365846 ttacaaaaaattccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatg 1365747  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggag 339  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||||||||       || |||||||||||||||||||||||||||||||||||    
T  1365746 aaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaacaaaattctcacttttgtttctaataaaaaggaccggagggag 1365647  T
Q  340 ta 341  Q
    ||    
T  1365646 ta 1365645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 396 - 703
Target Start/End: Original strand, 24168478 - 24168785
Alignment:
Q  396 aaaccaacccaaacctcttcttccttggaaggtccgcgctacaatttcacttcttacagttttaacggacgcttcatgtcgagctaacggtaccgtcaac 495  Q
    |||| ||||||||||||||||| ||||||||   |||||||| |||||||||||| || ||||||| |||||||  |||||  ||||||| ||  |||||    
T  24168478 aaacaaacccaaacctcttctttcttggaagcctcgcgctaccatttcacttctttcatttttaaccgacgcttgttgtcgctctaacggcacattcaac 24168577  T
Q  496 cgtcgtctctttaacttcttcgatctcaaatcctcacctaacgccactcctgttaacggcgtttccaccaaagacgttaccgttaacgccgaaaataacg 595  Q
    || ||||||||||||||||||   | ||||||||| ||||| |||||||| |||||||| ||||||| ||||||| ||||||||||| ||||||||||||    
T  24168578 cgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggtgtttccatcaaagacattaccgttaactccgaaaataacg 24168677  T
Q  596 tttggtttcgtctctttactcccactgttgctggagaagtcaccggagatggtggtgccaccaaaacaacctcccttcctgtagtcattttcttccacgg 695  Q
    ||||||| ||||||||||| ||||||||||  |||||||||  ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||    
T  24168678 tttggttccgtctctttacacccactgttggcggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcattttcttccacgg 24168777  T
Q  696 cggtggct 703  Q
     |||||||    
T  24168778 tggtggct 24168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 24337909 - 24338205
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||||||||  || |||||||||  |    ||||||    
T  24337909 tactccttccggtcctttatacaagaaataaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaacct----ctacat 24338004  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| ||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24338005 ttaaaaaaattccatgaataaccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatga 24338104  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagt 340  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||| ||||       || ||||||||||||||||||||||||||||||||||||    
T  24338105 aatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaagaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagt 24338204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 52 - 334
Target Start/End: Original strand, 7243319 - 7243602
Alignment:
Q  52 ggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnt 151  Q
    |||||||||||||||||||||||||||||||| ||||  |||||  |||||||||||||||||  || ||||||||||| |  |||||||||            
T  7243319 ggtcctttatacaagaaacaaaagacataaaatatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaa 7243418  T
Q  152 tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagctt 251  Q
    || |||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  7243419 tccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttaactt 7243518  T
Q  252 caaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccgga 334  Q
    ||||||||||||||||||| |||||  |||||||||||| ||||       || |||||||||||| |||||||||||||||||    
T  7243519 caaacatacttgaaacttggtcaatatttcttataaaaaagaccaaaaaagttctcacttttgtttataataaaaaggaccgga 7243602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 408 - 725
Target Start/End: Original strand, 24151651 - 24151980
Alignment:
Q  408 acctcttcttccttggaaggtccgcgctacaatttcacttcttacagttttaacggacgcttcatgtcgagctaacggtaccgtcaaccgtcgtctcttt 507  Q
    |||||||||||||||||| |   | ||||| |||||||||||| || |||||   |||||||| | |||  ||||||| ||||||||||| |||||||||    
T  24151651 acctcttcttccttggaaagctagagctaccatttcacttctttcacttttattcgacgcttcttctcgctctaacggcaccgtcaaccgccgtctcttt 24151750  T
Q  508 aacttcttcgatctcaaatcctcacctaacgccactcctgttaacggcgtttccaccaaagacgttaccgttaacgccgaaaataacgtttggtttcgtc 607  Q
    |||||||||  ||||||  ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  24151751 aacttcttcagtctcaatgcctcacctaactccactcccgttaacggcgtttccaccaaagacattaccgttaacaccgaaaataacgtttggtttcgtc 24151850  T
Q  608 tctttactcccac------------tgttgctggagaagtcaccggagatggtggtgccaccaaaacaacctcccttcctgtagtcattttcttccacgg 695  Q
    |||| ||||||||             ||||| ||||| || || ||||||||||||||||| ||||||||||||||||||||  |||||| |||||||||    
T  24151851 tcttcactcccaccgtcgccggagaagttgccggagaggttactggagatggtggtgccactaaaacaacctcccttcctgtcatcatttacttccacgg 24151950  T
Q  696 cggtggctacacttttctttctccttcctc 725  Q
     ||||||| || ||||||||| || |||||    
T  24151951 tggtggcttcagttttctttccccctcctc 24151980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 479 - 620
Target Start/End: Original strand, 24112443 - 24112584
Alignment:
Q  479 ctaacggtaccgtcaaccgtcgtctctttaacttcttcgatctcaaatcctcacctaacgccactcctgttaacggcgtttccaccaaagacgttaccgt 578  Q
    ||||||| ||||| ||||| ||| |  |||| ||||| |||| |||||| || ||||||||||  ||||||||||||||||||||||||||||||| |||    
T  24112443 ctaacggcaccgttaaccgccgttttcttaatttcttagatcgcaaatcttcccctaacgccatccctgttaacggcgtttccaccaaagacgttatcgt 24112542  T
Q  579 taacgccgaaaataacgtttggtttcgtctctttactcccac 620  Q
    |||||| ||| ||||||||||||| |||||||| || |||||    
T  24112543 taacgcagaagataacgtttggttccgtctcttcacacccac 24112584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 43034023 - 43034322
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | ||||||||    
T  43034023 tactccctccggtcctttatacaagaaacaaaaaacataaaacatcaacaccaagaaattacattgaaaatagtcatcttcatttaatacacttctacat 43034122  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43034123 ttaaaataattctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatga 43034222  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||| ||||    
T  43034223 aatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggtagta 43034322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 30537524 - 30537823
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  30537524 tactacctccggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 30537623  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||  |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30537624 ttaaaaatttttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatga 30537723  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||         | |||||||||||||||| |||||||| |||||||||||    
T  30537724 aatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaaatctcacttttgtttctaacaaaaaggatcggagggagta 30537823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 41 - 341
Target Start/End: Original strand, 50150211 - 50150509
Alignment:
Q  41 ttactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctaca 140  Q
    ||||| |||||| |||||||||||||||||||||||| ||||| || || || ||||||||||||||||||||  ||| ||||||||||||  |||||||    
T  50150211 ttacttcctccgctcctttatacaagaaacaaaagac-taaaatattaaaactaagaaaatacattgaaaataatcatcttcatttaatatgcttctaca 50150309  T
Q  141 tttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    |||       | ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  50150310 tttaaaaaact-ctaggaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaataaggacacaaatg 50150408  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagt 340  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||       || || |||||||||||||||||||||||||||||||||    
T  50150409 aaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcccttttgtttctaataaaaaggaccggagggagt 50150508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 40 - 341
Target Start/End: Complemental strand, 783095 - 782793
Alignment:
Q  40 attactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctac 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  || || |||||||| || |||||    
T  783095 attactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagttatctt-atttaatacatctctac 782997  T
Q  140 atttnnnnnnn-ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaa 238  Q
    ||||        ||| |||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  782996 atttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaa 782897  T
Q  239 tgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggg 337  Q
     ||||||||||||||||||||||||||||||| |||||  ||||||||||||||||         | ||||||||||||||||||||||||||||||||     
T  782896 agaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacaaaaaaaaatatcacttttgtttctaataaaaaggaccggaggt 782797  T
Q  338 agta 341  Q
    ||||    
T  782796 agta 782793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 27628052 - 27627753
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||  || ||||||||||||||||||||||    
T  27628052 tactcccttcggttctttatacaagaaacaaaagacataaaacatcaggatcaaggaaatacattgaaaatagttatcttcatttaatatatttctacat 27627953  T
Q  142 ttnnnnnnn-ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||        ||  |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  27627952 ttaaaaaaaattacatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctc--ataataaataagggcacaaatg 27627855  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggag 339  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||| |       ||| ||||||||||||||||||||||||||||||||||    
T  27627854 aaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggatcaaaaaaatttccacttttgtttctaataaaaaggaccggagggag 27627755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 36187619 - 36187319
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || || |||||||| || |||||||    
T  36187619 tactccctccggtcttttatacaagaaacaaaagacataaaacatcaagaccaagaaaatacattgaaaatagttatctt-atttaatacatctctacat 36187521  T
Q  142 ttnnnnnnn-ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||        ||| |||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36187520 ttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatg 36187421  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggag 339  Q
    ||||||||||||||| |||||||||||||| | |||  |||||||||||||||||         ||||||||||||||||||||||||||||||||| ||    
T  36187420 aaatttagcttcaaatatacttgaaacttggttaatatttcttataaaaaggaccaaaaaaaaattcacttttgtttctaataaaaaggaccggaggtag 36187321  T
Q  340 ta 341  Q
    ||    
T  36187320 ta 36187319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 3068026 - 3067729
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||| ||| ||||||||||| | ||||||||    
T  3068026 tactccctccggtcctttatacaataaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacacttctacat 3067927  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| |||||||||  ||||||||||  ||| ||||| |  |||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  3067926 ttagaaaaattc-atgaatacctctaaattaattcttctttattctactaacttatttacttttaattttctctctcataataaataagggcacaaatga 3067828  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||        || |||||||| ||||||||||||||||||||| ||||||    
T  3067827 aatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcactttt-tttctaataaaaaggaccggatggagta 3067729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 26877465 - 26877163
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||  || |||| |||||| |  |||||||    
T  26877465 tactccctccggtcctttatacaagaaacaaaagatataaaacatcaagaccaaggaaatacattgaaaatagttatcttcagttaatacacctctacat 26877366  T
Q  142 ttnnnnnnnt---tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaa 238  Q
    ||           || |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  26877365 ttaaaaaaaaaaatc-atgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctatctcataataaataaggacacaaa 26877267  T
Q  239 tgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggg 337  Q
    |||||||||||||||||||||||| ||| ||| |||||  |||||||||||||||||       || |||||||||||||||||||||||||||||||||    
T  26877266 tgaaatttagcttcaaacatacttaaaatttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 26877167  T
Q  338 agta 341  Q
    ||||    
T  26877166 agta 26877163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 54 - 341
Target Start/End: Complemental strand, 25934634 - 25934341
Alignment:
Q  54 tcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnt-- 151  Q
    |||||||||||||||||||||||||||||||||||| || ||  ||||||||||||||||| ||| ||||||||||| | ||||| ||||              
T  25934634 tcctttatacaagaaacaaaagacataaaacatcaagactaaagaaatacattgaaaatagtcatcttcatttaatacacttctatattttaaaaaaaaa 25934535  T
Q  152 ------tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatt 245  Q
          || ||||||||||| ||||||||| |||| |||||||  |||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  25934534 aaaaaatc-atgaataccct-aaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcacaaatgaaatt 25934437  T
Q  246 tagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||        || ||||||||||||||||||||||||||||||| |||||    
T  25934436 tatcttcaaacatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggagagagta 25934341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 33313417 - 33313287
Alignment:
Q  155 atgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaa 254  Q
    ||||||| || ||||||||||  ||| |||||||  |||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||  || ||    
T  33313417 atgaatatccataaattaattcatctttattccactaacttatttacttttaattttctctctcataataaataagggcacaaataaaatttatatttaa 33313318  T
Q  255 acatacttgaaacttgatcaatcttcttata 285  Q
    ||||| || ||||||| | ||||||||||||    
T  33313317 acatatttaaaacttggttaatcttcttata 33313287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 22651746 - 22651847
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||||  ||| ||| ||||||| | ||||| ||    
T  22651746 tactccctccagtcctttatacaagaaacaaaagacataaaacatcgagaccaaagaaatacattgaaaataatcatcttcttttaatacacttctatat 22651845  T
Q  142 tt 143  Q
    ||    
T  22651846 tt 22651847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 56551518 - 56551573
Alignment:
Q  196 acttacttttaatattctctctcataattaataagggcacaaatgaaatttagctt 251  Q
    |||| |||||| |||||||||| ||||| | |||||||||||||||||||||||||    
T  56551518 acttgcttttagtattctctctaataataattaagggcacaaatgaaatttagctt 56551573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 29990031 - 29989965
Alignment:
Q  64 aagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaata 130  Q
    ||||||||||| ||||||| |||||| |||||  ||| | |||||||||||  ||||||||||||||    
T  29990031 aagaaacaaaatacataaaccatcaagaccaatgaaaaatattgaaaatagctattttcatttaata 29989965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 39 - 341
Target Start/End: Complemental strand, 24990016 - 24989714
Alignment:
Q  39 tattactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttcta 138  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| ||| ||||||||||| | |||||    
T  24990016 tattactccttccggtcttttatacaagaaacaaaagacataaaacattaataccaagaaaatacatttaaaatagtcatcttcatttaatacacttcta 24989917  T
Q  139 catttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaa 238  Q
    |||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24989916 catttaaaaaaattctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaa 24989817  T
Q  239 tgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggga 338  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       || ||||||||||||||||||||||||||||||||||    
T  24989816 tgaaatttagcttcaaacatacttgaaacttgatcaatcttctaataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggga 24989717  T
Q  339 gta 341  Q
    |||    
T  24989716 gta 24989714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 42 - 287
Target Start/End: Original strand, 7568072 - 7568317
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  7568072 tactccctccggtcctttgtacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 7568171  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||  |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  7568172 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctttcataataaataagggcacaaatga 7568271  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 287  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  7568272 aatttaccttcaaacatacttgaaacttgatcaatcttcttataaa 7568317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 42 - 293
Target Start/End: Complemental strand, 18674803 - 18674552
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||| ||||||||||| ||||||||||    
T  18674803 tactacctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaatatagtcatcttcatttaatacatttctacat 18674704  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||  |||||||||| ||||||||||||||| ||||||| ||||||||||| ||| |||||||||||| ||||| |||||||||||||||||    
T  18674703 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttacttattttcaatattctctcttataataaataagggcacaaatga 18674604  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggac 293  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  18674603 aatttagcttcaaacatacttgaaacttggtcaattttcttataaaaaggac 18674552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 54 - 279
Target Start/End: Complemental strand, 45062743 - 45062518
Alignment:
Q  54 tcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnttc 153  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| | || |||||||       |||    
T  45062743 tcctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaatacacttttacatttaaaaaaattc 45062644  T
Q  154 tatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttca 253  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| |    
T  45062643 tatgaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaacaagggcacagatgaaatttagcttta 45062544  T
Q  254 aacatacttgaaacttgatcaatctt 279  Q
    |||||| |||||||||||||||||||    
T  45062543 aacatatttgaaacttgatcaatctt 45062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 42 - 294
Target Start/End: Original strand, 23319869 - 23320122
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||| || ||||||||||||||  || ||| ||||||| |  |||||||    
T  23319869 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaattacattgaaaatagttatcttcgtttaatacacctctacat 23319968  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23319969 ttaaaaaatttccatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatga 23320068  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggacc 294  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||| ||||    
T  23320069 aatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgacc 23320122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 40 - 341
Target Start/End: Original strand, 48390211 - 48390513
Alignment:
Q  40 attactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctac 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||  || || |||||||| || |||||    
T  48390211 attactccctccggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagttatctt-atttaatacatctctac 48390309  T
Q  140 atttnnnnnnn-ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaa 238  Q
    ||||        ||| |||||||||| ||||||||||| | | |||| |||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  48390310 atttaaaaaatattccatgaatacccctaaattaattattttttatttcatcaacttacttacttttaatattctcactcataataaataaggacacaaa 48390409  T
Q  239 tgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggg 337  Q
    |||||||||||||||||||||||||||||||| |||||  |||||||||||||||           |||||||||||||||||||||||||||||||||     
T  48390410 tgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggataaaaaaaaaattcacttttgtttctaataaaaaggaccggaggt 48390509  T
Q  338 agta 341  Q
    ||||    
T  48390510 agta 48390513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 165 - 341
Target Start/End: Complemental strand, 8417835 - 8417659
Alignment:
Q  165 ttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaaacatacttga 264  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8417835 ttaaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttga 8417736  T
Q  265 aacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||| ||||    
T  8417735 aacttgatcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 8417659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 42 - 276
Target Start/End: Original strand, 41850907 - 41851142
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||| |  || ||||||||||| |  |||||||    
T  41850907 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaattgttatcttcatttaatacacctctacat 41851006  T
Q  142 ttnnnnnnnttct-atgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||       || | |||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||    
T  41851007 ttaaatttttttttatgaatacccctaaattaattactctttattccaccaactcacttacttttaatattctctctcataataaataagggtacaaatg 41851106  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaat 276  Q
    |||||||| ||||||||||||||||||||| |||||    
T  41851107 aaatttagtttcaaacatacttgaaacttggtcaat 41851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 42 - 343
Target Start/End: Original strand, 48394055 - 48394356
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||  |||||| ||||||||||||||||   || ||||||||||| |  ||||| |    
T  48394055 tactccctccgatcctttatacaagaaacaaaagccataaaacatcaggaccaaggaaatacattgaaaatatttatcttcatttaatacacctctac-t 48394153  T
Q  142 ttnnnnnnnttct--atgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaat 239  Q
    ||       ||||  | |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||  ||| ||||||| |||||||||||||||    
T  48394154 tttttcttcttcttcaagaatacccctaaattaattactctttattccaccaacttacttacttttaatat--tctttcataataaataagggcacaaat 48394251  T
Q  240 gaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggga 338  Q
    ||||||||| ||||||||||||| ||||||| |||||  ||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  48394252 gaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaaggacaaaaaaaaaattcacttttgtttctaataaaaaggaccggaggga 48394351  T
Q  339 gtact 343  Q
    |||||    
T  48394352 gtact 48394356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 8417982 - 8417896
Alignment:
Q  57 tttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacattt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||| | ||||||||||    
T  8417982 tttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattaaaaatattcatattcatttaatacacttctacattt 8417896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 965166 - 965222
Alignment:
Q  191 aacttacttacttttaatattctctctcataattaataagggcacaaatgaaattta 247  Q
    ||||||||||||||||||||||| ||||||||| ||||||  |||||| ||||||||    
T  965166 aacttacttacttttaatattctttctcataataaataagaacacaaacgaaattta 965222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 205; Significance: 1e-111; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 42 - 344
Target Start/End: Complemental strand, 54748290 - 54747988
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  || ||||||||||| | ||||||||    
T  54748290 tactccctccaatcctttatacaataaacaaaagacataaaacatcaacaccaagaaaatacgttgaaaatagttatcttcatttaatacacttctacat 54748191  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       || ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  54748190 ttaaaaaaattatatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatga 54748091  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||    
T  54748090 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 54747991  T
Q  342 cta 344  Q
    |||    
T  54747990 cta 54747988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 26848053 - 26848352
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| | |||||||     
T  26848053 tactccctccgatcttttatacaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacag 26848152  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  26848153 ttaaaaaaattctatgaacacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaaaga 26848252  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||       || |||||||||||| ||||||||||||||||||||||||    
T  26848253 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaatgaccaaaaaaattctcacttttgtttataataaaaaggaccggagggagta 26848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 39 - 341
Target Start/End: Original strand, 25095892 - 25096179
Alignment:
Q  39 tattactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttcta 138  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  25095892 tattactccctccgatcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatacatttcta 25095991  T
Q  139 catttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaa 238  Q
                   ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  25095992 ---------------tatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaa 25096076  T
Q  239 tgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggga 338  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||    
T  25096077 tgaaatttagcttcaaacatacttgaaatttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggga 25096176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 42 - 287
Target Start/End: Original strand, 48905527 - 48905772
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  48905527 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagactaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 48905626  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||  |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48905627 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatga 48905726  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 287  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  48905727 aatttaccttcaaacatacttgaaacttggtcaatcttcttataaa 48905772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 35612911 - 35613212
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||||||||  || ||||||||||| |  |||||||    
T  35612911 tactccctccagtcctttatacaagaaataaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 35613010  T
Q  142 ttnnnnnnn-ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||        ||| |||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  35613011 ttaaaaaaaattccatgaatacccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataaataagggcacaaatg 35613110  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggag 339  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||||||||       || |||||||||||||||||||||||||||||||||||    
T  35613111 aaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggag 35613210  T
Q  340 ta 341  Q
    ||    
T  35613211 ta 35613212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 54 - 341
Target Start/End: Complemental strand, 50834295 - 50834007
Alignment:
Q  54 tcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnttc 153  Q
    |||||||||||||||||||||||||||||||||||  || ||| ||||| |||||||||||  || |||||||||||||| |||||||||        ||    
T  50834295 tcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttaaaaaaaatc 50834196  T
Q  154 tatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttca 253  Q
     |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  50834195 catgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttca 50834096  T
Q  254 aacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    ||||||||||||||||| |||||  |||||||||||||||||       || ||||||||||| |||||||||||||||||||||||||    
T  50834095 aacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggagggagta 50834007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 54 - 341
Target Start/End: Original strand, 50841558 - 50841846
Alignment:
Q  54 tcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnttc 153  Q
    |||||||||||||||||||||||||||||||||||  || ||| ||||| |||||||||||  || |||||||||||||| |||||||||        ||    
T  50841558 tcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttaaaaaaaatc 50841657  T
Q  154 tatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttca 253  Q
     |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  50841658 catgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttca 50841757  T
Q  254 aacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    ||||||||||||||||| |||||  |||||||||||||||||       || ||||||||||| |||||||||||||||||||||||||    
T  50841758 aacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggagggagta 50841846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 46320734 - 46320434
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||  |||||||||||||||||  || ||||||||||| |  |||| ||    
T  46320734 tactccctccggtcctttatacaagaaacaacagacataaaacatcaagaccaaagaaatacattgaaaatagtaatattcatttaatacacctctatat 46320635  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| || || |||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  46320634 ttaagaaacttccattaacacccctaaattaattactctttatttcaccaacttacttacttttaatattctctctcataataaataagggtacaaatga 46320535  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagt 340  Q
    |||||| |||||||||||||| ||||||| |||||  |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||    
T  46320534 aatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggacctaaaaaattctcacttttgtttctaataaaaaggaccggagggagt 46320435  T
Q  341 a 341  Q
    |    
T  46320434 a 46320434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 22515941 - 22515639
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttc--tac 139  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||  || ||| |||||||||||||||||  || ||||||||||| |  ||  |||    
T  22515941 tactccctctgatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatacattgaaaatagttatcttcatttaatacacctcaatac 22515842  T
Q  140 atttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaat 239  Q
    ||||       ||| || ||||  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22515841 atttaaaaaaattccataaatattcttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaat 22515742  T
Q  240 gaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggga 338  Q
    |||||||||||||| |||||||||||||||| |||||  |||||||||||||||||        ||||| ||||||||||||||||||||| ||||||||    
T  22515741 gaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaagaatttcagttttgtttctaataaaaaggatcggaggga 22515642  T
Q  339 gta 341  Q
    |||    
T  22515641 gta 22515639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 57 - 287
Target Start/End: Original strand, 9663814 - 9664041
Alignment:
Q  57 tttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnttctat 156  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||       ||  ||    
T  9663814 tttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcat 9663913  T
Q  157 gaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaaac 256  Q
    |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||    
T  9663914 gaatacccctaaattaattactctttattccaccaacttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttaccttcaaac 9664011  T
Q  257 atacttgaaacttgatcaatcttcttataaa 287  Q
    || ||||||||||| ||||||||||||||||    
T  9664012 at-cttgaaacttggtcaatcttcttataaa 9664041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 23026177 - 23026479
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||  | |||  |||||||||||||||||  || ||||||||||| || |||||||    
T  23026177 tactccctccgatcctttatacaagaaacaaaagacataaaatatcaggatcaaagaaatacattgaaaatagttatcttcatttaatacatctctacat 23026276  T
Q  142 ttnnnnnnnt---tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaa 238  Q
    ||           || |||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23026277 ttaaaaaaaaaaatc-atgaatgcccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataatcaataagggcacaaa 23026375  T
Q  239 tgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggg 337  Q
    ||||||||| |||||||||||||||||| || ||||||  |||||||||||| ||||       || ||||||||||||||||||||||||||||||||     
T  23026376 tgaaatttaacttcaaacatacttgaaattttatcaatatttcttataaaaatgaccaaaaaaattctcacttttgtttctaataaaaaggaccggagga 23026475  T
Q  338 agta 341  Q
    ||||    
T  23026476 agta 23026479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 151 - 339
Target Start/End: Complemental strand, 25313555 - 25313366
Alignment:
Q  151 ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagct 250  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25313555 ttctatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagct 25313456  T
Q  251 tcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggag 339  Q
    |||||||||||||||||||| |||||  |||||||||||||||||       || |||||||||||||||||||||||||||||||||||    
T  25313455 tcaaacatacttgaaacttggtcaatatttcttataaaaaggacccaaaaaattctcacttttgtttctaataaaaaggaccggagggag 25313366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 42 - 325
Target Start/End: Original strand, 20922666 - 20922951
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |  || ||| ||||||||||||||||   || ||||||||||| |  |||||||    
T  20922666 tactccctccggtcctttatacaaaaaacaaaagacataaaacattaggactaaggaaatacattgaaaatatttatcttcatttaatacacctctacat 20922765  T
Q  142 ttnnnnnnnt-tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||         || ||||||| || ||||||||||| | | ||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  20922766 ttaaaaaaaaatcaatgaatatccctaaattaattattttttattccaccaacttacttacttttaatattctctctcataataaataagagcacaaatg 20922865  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaa 325  Q
    ||||||||||||||  |||||||||||||| |||||  ||||||||||||| |||        |||||||||||||||||||||||    
T  20922866 aaatttagcttcaagaatacttgaaacttggtcaatatttcttataaaaagaaccaaaaaaaatttcacttttgtttctaataaaa 20922951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 57 - 339
Target Start/End: Original strand, 49794876 - 49795149
Alignment:
Q  57 tttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnttctat 156  Q
    ||||||||||||||||||||||||||||||||| ||||           |||||||||  || ||||||||||| |  |||||||||       ||  ||    
T  49794876 tttatacaagaaacaaaagacataaaacatcaagacca-----------tgaaaatagttatcttcatttaatacacctctacatttaattttttttcat 49794964  T
Q  157 gaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaaac 256  Q
    |||||||| | ||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||| |||    
T  49794965 gaataccccttaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagagtacaaatgaaatttagcttc-aac 49795063  T
Q  257 atacttgaaacttgatcaat-cttcttataaaaag--gaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggag 339  Q
    ||||||||||||||||||||  |||||||||||||   |         || |||||||||||||||||||||||||||||||||||    
T  49795064 atacttgaaacttgatcaatatttcttataaaaagaaaaaaaaaaagattctcacttttgtttctaataaaaaggaccggagggag 49795149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 30363802 - 30363874
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatag 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  30363802 tactctctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaagaaaatacattgaaaatag 30363874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 25313625 - 25313559
Alignment:
Q  45 tccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaa 111  Q
    |||||||| || ||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||    
T  25313625 tccctccgatcttttatacaagaaacaaaagacataaaacatcaggaccaaaaaaatacatttaaaa 25313559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 9663769 - 9663813
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacat 86  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  9663769 tactccctccgatcctttatacaagaaacaaaagacataaaacat 9663813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 31612861 - 31612906
Alignment:
Q  198 ttacttttaatattctctctcataattaataagggcacaaatgaaa 243  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||    
T  31612861 ttacttttaatattctctctcataatgaataaggacacagatgaaa 31612906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 33280367 - 33280416
Alignment:
Q  196 acttacttttaatattctctctcataattaataagggcacaaatgaaatt 245  Q
    ||||||||||||||||||||||| |||| ||||||  |||||||||||||    
T  33280367 acttacttttaatattctctctcgtaataaataagaacacaaatgaaatt 33280416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 42 - 342
Target Start/End: Complemental strand, 13882384 - 13882085
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | ||||||||    
T  13882384 tactccctccggtcttttatacaagaaacaaaaaacataaaacatcaacaccaagaaattacattgaaaatagtcatcttcatttaatacacttctacat 13882285  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  13882284 ttaaaataattctatgaatacccttaaattaattactctttattccatcaacttacttacttt-aatattctctctcataatcaataagggcacaaatga 13882186  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||       || |||||||| ||||||||||||||||||||||| ||||    
T  13882185 aatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttatttctaataaaaaggaccggaggtagta 13882086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 8670033 - 8669735
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| | ||||||||    
T  8670033 tactacctccgatcctttataaaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacat 8669934  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||        | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8669933 ttaaaaaaaatttatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatga 8669834  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |        | |||||||| ||||||||||||||||||||| ||||||    
T  8669833 aatttaacttcaaacatacttgaaacttgatcaatcttcttataaaaagga-caaaaaaaatctcacttttatttctaataaaaaggaccggaaggagta 8669735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 45 - 332
Target Start/End: Complemental strand, 29226572 - 29226286
Alignment:
Q  45 tccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttn 144  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| | ||||||||||     
T  29226572 tccctacggtcctttatacaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacattta 29226473  T
Q  145 nnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaat 244  Q
          |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||||| ||||| ||||||||||||||    
T  29226472 aaaaaattctatcaatacccttaaattaattactctttattccatcaacttacttacttttaatattttcattcataatcaataa-ggcacaaatgaaat 29226374  T
Q  245 ttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccg 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |       || ||||||||||||||||||||||||||||    
T  29226373 ttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaacaaaaaaattctcacttttgtttctaataaaaaggaccg 29226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 32306008 - 32305708
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||||  || || |||||||| || |||||||    
T  32306008 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagactaaagaaatacattgaaaatagttatctt-atttaatacatctctacat 32305910  T
Q  142 ttnnnnnnn-ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||        ||| |||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32305909 ttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatg 32305810  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggag 339  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||    
T  32305809 aaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaaaggaccggaggtag 32305710  T
Q  340 ta 341  Q
    ||    
T  32305709 ta 32305708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 54 - 335
Target Start/End: Complemental strand, 37534055 - 37533773
Alignment:
Q  54 tcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnn-tt 152  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||| ||||||||||||        ||    
T  37534055 tcctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattaaaaatagtcatcttcatttaatacatttctacatttaaaaaaaatt 37533956  T
Q  153 ctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttc 252  Q
     |||||||||  |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  37533955 atatgaatacatttaaattaattactctttattccatcaacttacttatttttaatattctctctcataatcaataagggcacaaacgaaatttaacttc 37533856  T
Q  253 aaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggag 335  Q
    ||| ||| ||||||||||||||||||||| |||||||||| |       || |||||||||||| |||||||||||| |||||    
T  37533855 aaatatatttgaaacttgatcaatcttctaataaaaaggatcaaaaaaattctcacttttgtttataataaaaaggatcggag 37533773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 41 - 336
Target Start/End: Complemental strand, 8107193 - 8106899
Alignment:
Q  41 ttactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctaca 140  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | | ||||||||||| | |||||||    
T  8107193 ttactccc-ccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcctcttcatttaatacacttctaca 8107095  T
Q  141 tttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    |||        |  |||||||||| |||||||||| |||| |||||||  |||||| ||||||||||| |||| ||||||||| ||||||| ||||||||    
T  8107094 tttaaaaaaaattcatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctatctcataataaataaggacacaaatg 8106995  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagg 336  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |       || ||| ||||||||||||||||||||||||||||    
T  8106994 aaatttagtttcaaacatacttgaaacttggtcaatcttcttataaaaaggatcaaaaaaattctcatttttgtttctaataaaaaggaccggagg 8106899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 51 - 334
Target Start/End: Original strand, 35634693 - 35634977
Alignment:
Q  51 cggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnn 150  Q
    ||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||  || ||||||||||| | || |||||||           
T  35634693 cggtcctttatacaagaaacaaaagacataaaacatcagtaccaaagaaatacattgaaaatagttatcttcatttaatacacttttacatttaaaaaaa 35634792  T
Q  151 ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagct 250  Q
     || ||||||| || ||||||||||||||| |||  || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35634793 atccatgaataaccctaaattaattactctttatcgcaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagct 35634892  T
Q  251 tcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccgga 334  Q
    |||||||||||||||||||| |||||  |||||||||||| |||        || |||||||||||| ||||||||| |||||||    
T  35634893 tcaaacatacttgaaacttggtcaatatttcttataaaaatgacaaaaaaaattctcacttttgtttataataaaaatgaccgga 35634977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 45177489 - 45177598
Alignment:
Q  35 tatttattactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaat-acattgaaaataggcattttcatttaatatat 133  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |     
T  45177489 tatttattactccctccgatcctttatacaaaaaacaaaagacataaaacatcaacaccaagaaaataacattgaaaatagtcatcttcatttaatacac 45177588  T
Q  134 ttctacattt 143  Q
    ||||||||||    
T  45177589 ttctacattt 45177598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 42 - 290
Target Start/End: Complemental strand, 42570204 - 42569953
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||| |||| ||||||||| |||||| |||||||||||||||| |  | |||  |||||||||||||||||  || ||||||||||| |  | ||||     
T  42570204 tactccatccgatcctttatataagaaataaaagacataaaacattaggatcaaagaaatacattgaaaatagttatcttcatttaatacacctttacaa 42570105  T
Q  142 ttnnnnnnnt--tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaat 239  Q
    ||          |||||||||| || ||||||||||||| | |||| |||||||||||||| |||||||||||||||||||||| |||||  ||||||||    
T  42570104 ttaaaaaaaaaatctatgaatatccctaaattaattactatttatttcatcaacttacttatttttaatattctctctcataataaataaatgcacaaat 42570005  T
Q  240 gaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaag 290  Q
     ||||||||||||||  |||||| ||||||| |||||  |||||||||||||    
T  42570004 aaaatttagcttcaatgatacttaaaacttggtcaatatttcttataaaaag 42569953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 36741715 - 36741815
Alignment:
Q  169 attaattactctctattccatcaacttacttacttttaatattctctc---tcataattaataagggcacaaatgaaatttagcttcaaacatacttgaa 265  Q
    ||||||||||||  ||||||  ||||||||||||||||||||||||||   | ||||| ||||||| |||||||||||||||||||| |||| | |||||    
T  36741715 attaattactcttaattccactaacttacttacttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaacacatttgaa 36741814  T
Q  266 a 266  Q
    |    
T  36741815 a 36741815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 157 - 292
Target Start/End: Complemental strand, 17855533 - 17855397
Alignment:
Q  157 gaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaaac 256  Q
    |||||||| ||||||||||||| |    ||||| |||||| |||||||||||| | | |||||| || |||||||  ||||||||||||||| ||| |||    
T  17855533 gaatacccctaaattaattactattgcctccattaacttaattacttttaatactatttctcatcataaataaggatacaaatgaaatttagtttccaac 17855434  T
Q  257 atacttgaaacttgatcaat-cttcttataaaaagga 292  Q
    | |||| ||| ||| |||||  |||||||||||||||    
T  17855433 acacttaaaaattgttcaatatttcttataaaaagga 17855397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 41435502 - 41435801
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| | ||||||||    
T  41435502 tactccctccggtcctttatataagaaacaaaaaacataaaacatcaacaccaagaaaatgcattgaaaatagtcatcttcatttaatacacttctacat 41435601  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||  |||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  41435602 ttaattttttttcatgaatacccttaaattaattactctttatttcatcaacttatttacttttaatattctatctcataatcaataagggcacaaatga 41435701  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||       || ||||||||||||||||||||||||||||||| |||||    
T  41435702 aatttagcttcaaacatacttgaaacttgatcaatcttattataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagcgagta 41435801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 21344974 - 21345270
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||| || | ||||||||    
T  21344974 tactccctccagtcctttatacaagaaacaaaagacataaaacatcaagaccaaaaaaatacattgaaaatagtcatcttcatttattacacttctacat 21345073  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||| ||| ||||||| |||||||||    
T  21345074 ttaaaacaattctataaatacccttaaattaattactctttattccatcaacttacttacttttaat--tctctctcacaatcaataaggacacaaatga 21345171  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||| ||||    
T  21345172 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggacc-aaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 21345270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 39778543 - 39778845
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||  || ||||||||||| |  |||||||    
T  39778543 tactccctccggtcctttatacaagaaataaaagacataaaacatcaagaccaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 39778642  T
Q  142 ttnnnnnnn--ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaat 239  Q
    ||         ||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39778643 ttaaaaaaaaattccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaat 39778742  T
Q  240 gaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggga 338  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||    
T  39778743 gaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaaaagaccggaggga 39778842  T
Q  339 gta 341  Q
    |||    
T  39778843 gta 39778845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 11964436 - 11964151
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||           | ||| ||||||||||| | ||||||||    
T  11964436 tactccctccggtcctttatacaagaaacaaaagaca--aaacatcaacaccaagaaaata-----------gtcatcttcatttaatacacttctacat 11964350  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11964349 ttaaaaaa-ttctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatga 11964251  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||       || |||||||||||||||||| ||||||||||||||||||    
T  11964250 aatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaatagaaaggaccggagggagta 11964151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 42 - 287
Target Start/End: Complemental strand, 7105853 - 7105608
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  7105853 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaataaatacattgaaaatagtcatcttcatttaatacatttctacat 7105754  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||  |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  7105753 ttaaatttttttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagggcacaaatga 7105654  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 287  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||    
T  7105653 aatttaccttcaagcatacttgaaacttggtcaatcttcttataaa 7105608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 22066291 - 22066568
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||               
T  22066291 tactccctcctgtcctttatacaagaaacaaaagacataaaacatcaacatcaataaaatacattgaaaatagtcatcttcatttaata----------- 22066379  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
               ||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  22066380 -----------ctacgaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatga 22066468  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||| |||||||||||    
T  22066469 aatttagctttaaacatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggatcggagggagta 22066568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 93 - 341
Target Start/End: Complemental strand, 10448967 - 10448719
Alignment:
Q  93 caagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaa 192  Q
    |||||||||| ||||||||||| ||| ||||||||||| | ||||||||||       || ||||||||||||||||||||||||| | |||||||||||    
T  10448967 caagaaaatatattgaaaatagtcatcttcatttaatacacttctacatttaaaaaagttatatgaatacccttaaattaattactatttattccatcaa 10448868  T
Q  193 cttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 292  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  10448867 cttacttacttttaatattctctctcataatcaataagagcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaagagga 10448768  T
Q  293 ccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    ||       || |||||||||||||||||||||||||||||||||||||    
T  10448767 ccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 10448719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 52 - 341
Target Start/End: Original strand, 10728196 - 10728486
Alignment:
Q  52 ggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnt 151  Q
    |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||  || |||| |||||| |  |||||||||            
T  10728196 ggtcctttatacaagaaacaaaagacataaaacatcaagactaaggaaatacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaa 10728295  T
Q  152 tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagctt 251  Q
    |  |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  10728296 ttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcataaatgaaatttagctt 10728395  T
Q  252 caaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    ||||||||||||||||||  |||||  |||||||||||||||||       || |||||||||||||||||||||||||||||||||||||    
T  10728396 caaacatacttgaaactttgtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 10728486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 42 - 333
Target Start/End: Complemental strand, 25187238 - 25186947
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |  |||||| |||||||||||||||||  || ||||||||||| |  |||||||    
T  25187238 tactccctctggtcctttatacaagaaacaaaagacataaaacattaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 25187139  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| ||||||| ||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25187138 ttaaaaaaattccatgaatatccttaaattaattactcttaattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatga 25187039  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccgg 333  Q
    |||||||||||| |||||||||||||||| |||||  |||||||||||| ||||        |||||||||||||||||||||||||||||||    
T  25187038 aatttagcttcagacatacttgaaacttggtcaatatttcttataaaaatgaccaaaaaaa-tttcacttttgtttctaataaaaaggaccgg 25186947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 42 - 336
Target Start/End: Original strand, 42993698 - 42993994
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaa-gacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctaca 140  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| | ||||| |    
T  42993698 tactccctccggtcctttatacaagaaacaaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacacttctata 42993797  T
Q  141 tttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    |||        || |||||||||| |||||||||| |||| |||||||  |||||| ||||||||||| |||||||||||||  ||||||||||||||||    
T  42993798 tttaaataaaatccatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataacaaataagggcacaaatg 42993897  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggacc-nnnnnnnttttcacttttgtttctaataaaaaggaccggagg 336  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||    
T  42993898 aaatttatcttcaaacatacttgaaatttggtcaatcttcttataaaaaggaccaaaaaaaattctcacttttgtttctaataaaaaggaccggagg 42993994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 13693423 - 13693722
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||| ||||||||||| | ||||| ||    
T  13693423 tactctcttcggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacacttctatat 13693522  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||        |  |||||||||| |||||||||| |||| |||||||  |||||| ||||||||||| |||||||||||||| ||||||| || ||||||    
T  13693523 ttaaaaaatattcatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataaggacagaaatga 13693622  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||||||||||       || ||||||||||||||||||||||||||||||| |||||    
T  13693623 aatttatctttaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagagagta 13693722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 19926680 - 19926978
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  |||||| ||||||||||||||||   || ||||||||||| |  ||||| |    
T  19926680 tactccctccggtcctttatacaagaaacaaaagccataaaacatcaggaccaaggaaatacattgaaaatatttatcttcatttaatacacctctactt 19926779  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||        |  | |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  19926780 ttttttcttcttcaagaatacccctaaattaattactctttattccaccaacttacttacttttaatat--tctctcataataaataagggcacaaatga 19926877  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagt 340  Q
    ||||||| ||||||||||||| ||||||| |||||  |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  19926878 aatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaaggaccaaaaaaaatttcacttttgtttctaataaaaaggaccggagggagt 19926977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 45 - 334
Target Start/End: Original strand, 10700120 - 10700410
Alignment:
Q  45 tccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttn 144  Q
    ||||||||||| |||||| ||||||||||| || ||||||||||  |||||| |||||||||||||||||  |||||||||||||| |  |||||||||     
T  10700120 tccctccggtcttttatataagaaacaaaaaacgtaaaacatcaggaccaaggaaatacattgaaaatagttattttcatttaatacacctctacattta 10700219  T
Q  145 nnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaat 244  Q
          ||| |||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| | ||||||||||||||||||    
T  10700220 aaaaaattccatgaatacccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataagtaagggcacaaatgaaat 10700319  T
Q  245 ttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccgga 334  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||| |||        || ||||||||||||||||||||||||| ||||    
T  10700320 ttagcttcagacatacttgaaacttggtcaatatttcttataaaaaagactaaaaaaattctcacttttgtttctaataaaaaggatcgga 10700410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 49 - 336
Target Start/End: Original strand, 36191475 - 36191763
Alignment:
Q  49 tccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnn 148  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||  || || |||||||| |  |||| ||||         
T  36191475 tccggtcctttatacaagaaacaaaagacataaaacat-aggaccaagaaaatacattgaaaatagttatctttatttaatacacctctatatttcaaaa 36191573  T
Q  149 nnt---tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatt 245  Q
          || || ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36191574 aaaaaatc-attaatacccctaaattaattactctttattcca-caacttacttacttttaatattctctctcataataaataagggcacaaatgaaatt 36191671  T
Q  246 tagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagg 336  Q
    ||||||||||||||||||||||||  |||||  |||||||||||||||||        | ||||||||||||||||||||||||||||||||    
T  36191672 tagcttcaaacatacttgaaacttagtcaatatttcttataaaaaggaccaaaaaaaatctcacttttgtttctaataaaaaggaccggagg 36191763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 28831257 - 28830958
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||  |||||  |||||||||||||||||  || ||||||||||| |  ||||| |    
T  28831257 tactccctccggtcctttatacaagacacaaaagatataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacgt 28831158  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||        || |||||||||| ||||||||||||||| |||| || ||| |||||||||||||||||| ||||||||||| ||||||| |||||||||    
T  28831157 tttaaaaaaatc-atgaatacccctaaattaattactctttattgcaccaatttacttacttttaatattttctctcataataaataaggacacaaatga 28831059  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagt 340  Q
    |||||| |||||||||||||| ||| ||| |||||  |||||||||||||||||       || | |||||| |||||||||||| ||||| |||| |||    
T  28831058 aatttaacttcaaacatacttaaaatttggtcaatatttcttataaaaaggaccaaaaaaattcttacttttatttctaataaaatggaccagaggaagt 28830959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 203 - 342
Target Start/End: Complemental strand, 41462805 - 41462665
Alignment:
Q  203 tttaatattctctctcataattaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnn 301  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||||||           
T  41462805 tttattattctctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggacctaaaaaa 41462706  T
Q  302 ttttcacttttgtttctaataaaaaggaccggagggagtac 342  Q
    || |||||||||||||||||||||||||| |||||||||||    
T  41462705 ttctcacttttgtttctaataaaaaggactggagggagtac 41462665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 41462942 - 41462845
Alignment:
Q  33 tttatttattactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaata 130  Q
    ||||| || |||||| |||||||||||||||||||||||| |||||||||||||||| | |||| ||||| ||||||||| |  || |||||||||||    
T  41462942 tttatctaatactccttccggtcctttatacaagaaacaacagacataaaacatcaagatcaaggaaatatattgaaaatggtaatcttcatttaata 41462845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 10448995 - 10448965
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaa 72  Q
    |||||||||||||||||||||||||||||||    
T  10448995 tactccctccggtcctttatacaagaaacaa 10448965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 8e-91; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 16130405 - 16130707
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||||||||  || ||||||||||| |  |||||||    
T  16130405 tactccctccggtcctttatacaagaaacaaaagagataaaacatcaagatcaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 16130504  T
Q  142 ttnnnnnnnt--tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaat 239  Q
    ||          || |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16130505 ttaaaaaaaaaatccatgaatacccttaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaat 16130604  T
Q  240 gaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggga 338  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  16130605 gaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggaggga 16130704  T
Q  339 gta 341  Q
    |||    
T  16130705 gta 16130707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 1554022 - 1553717
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaa------gaaaatacattgaaaataggcattttcatttaatatattt 135  Q
    |||||||||| ||||||||||||| |||  ||| |||||||||| |||||||||      ||||||||||||||||||| ||  ||||||||||| | ||    
T  1554022 tactccctccagtcctttatacaaaaaaacaaaaacataaaacaccaacaccaacaccaagaaaatacattgaaaatagtcaacttcatttaatacactt 1553923  T
Q  136 ctacatttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcac 235  Q
    ||||||||       |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1553922 ctacatttaaaaaaattctataaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcac 1553823  T
Q  236 aaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccgga 334  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||       || ||| ||||||||||||||||||||||||||    
T  1553822 aaatgaaatttagcttcaaacatacttgaaatttgatcaatacttcttataaaaaggaccacaaaaattctca-ttttgtttctaataaaaaggaccgga 1553724  T
Q  335 gggagta 341  Q
    |||||||    
T  1553723 gggagta 1553717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 30222992 - 30222693
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  30222992 tactccctccggttctttatataaaaaacaaaagacataaaatatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatatacttctacat 30222893  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||        | |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||    
T  30222892 ttaaaaaaagtatatgaatatccttaaattaattactctttaatccatcaacttacttacttttaatattctctttcataatcaataagaacacaaatga 30222793  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    | |||||| ||||||||| ||||||||||||||||||||||||||||| || |       || ||| |||||||||||||||||||||||||||| ||||    
T  30222792 attttagcatcaaacatatttgaaacttgatcaatcttcttataaaaatgatcaaaaaaattctcatttttgtttctaataaaaaggaccggaggtagta 30222693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 52 - 327
Target Start/End: Original strand, 35050208 - 35050483
Alignment:
Q  52 ggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnt 151  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| | ||||||||||            
T  35050208 ggtcctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaa 35050307  T
Q  152 tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagctt 251  Q
      |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  35050308 aatatgtatacccttaaattaattactctttatttcatcaacttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagctt 35050407  T
Q  252 caaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaag 327  Q
    || ||||||||||||||||||| ||||| |||||||||| |||       || |||||||||||||||||||||||    
T  35050408 cagacatacttgaaacttgatcgatctttttataaaaagaaccaaaaaaattctcacttttgtttctaataaaaag 35050483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 45192467 - 45192765
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  45192467 tacttcctccggttctttatacaagaaacaaaagacataaa-catcaacatcaagaaaatacattgaaaatagtcatcttcatttaatatacttctacat 45192565  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||  |||||||||    
T  45192566 ttaaaaaaattccatgaatacccttaaattaattactctttattccatcaacttacttatttttaatattctgtctcataattaataagaacacaaatga 45192665  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    | |||||| | ||| ||| | ||||||| |||||||||||||||||||||| |       || |||||||||||||||||||||||||||||||| ||||    
T  45192666 attttagcataaaaaatattagaaacttaatcaatcttcttataaaaaggatcaaaaaaattctcacttttgtttctaataaaaaggaccggaggtagta 45192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 5800331 - 5800629
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| | ||||| ||    
T  5800331 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacacttctatat 5800430  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    |        ||| |||||||||| |||||||||| |||| |||||||  |||||| ||||||||||| |||||||||||||| ||||||| |||||||||    
T  5800431 taaaaaaaattc-atgaatacccctaaattaatttctctttattccactaacttatttacttttaattttctctctcataataaataaggacacaaatga 5800529  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||       ||  |||||||||||||||||||||||| | |||||||||    
T  5800530 aatttatcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattcccacttttgtttctaataaaaaggaactgagggagta 5800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 16129851 - 16130157
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||  || ||||||||||| |  | |||||    
T  16129851 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaaaatcaaggaaatacattgaaaatagttatcttcatttaatacacctttacat 16129950  T
Q  142 ttnnnnnnnt------tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcac 235  Q
    ||              || |||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  16129951 ttaaaaaaaaaaaaaatccatgaatacccctaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcac 16130050  T
Q  236 aaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccgga 334  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  16130051 aaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccgga 16130150  T
Q  335 gggagta 341  Q
    |||||||    
T  16130151 gggagta 16130157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 27654904 - 27654606
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||  || ||||||||||| |  |||| ||    
T  27654904 tactccctccgatcctttatataagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtaatcttcatttaatacacctctatat 27654805  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| || || |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||  ||||| |||||||||||||||||    
T  27654804 ttaagaaaattccattaaaacccctaaattaattactctttattccaccaacttacttacttttaatattctctc--ataataaataagggcacaaatga 27654707  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagt 340  Q
    |||||| ||||||| |||||| |||||||||||||  |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||    
T  27654706 aatttaacttcaaagatacttaaaacttgatcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagt 27654607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 40987961 - 40988261
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||  || ||||||||||| |  |||||||    
T  40987961 tacttcctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 40988060  T
Q  142 ttnnnnnnn-ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||        ||| |||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  40988061 ttaaaaaaaattcaatgaatacccctaaattaattactctttattccgccaacttacttacttttaatattctc--tcataataaataagggcacaaatg 40988158  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggacc-nnnnnnnttttcacttttgtttctaataaaaaggaccggaggga 338  Q
    |||||||| ||||||||||||| ||||||| |||||  |||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  40988159 aaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaaggaccaaaaaaaaaattcacttttgtttctaataaaaaggaccggaggga 40988258  T
Q  339 gta 341  Q
    |||    
T  40988259 gta 40988261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 109 - 341
Target Start/End: Original strand, 27332899 - 27333131
Alignment:
Q  109 aaataggcattttcatttaatatatttctacatttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaat 208  Q
    |||||| ||| ||||||||||| | ||||| ||||       |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  27332899 aaatagtcatcttcatttaatacacttctatatttaaaaaaattctataaatacccttaaattaattactctttattccattaacttacttacttttaat 27332998  T
Q  209 attctctctcataattaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcac 308  Q
    ||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       || ||||    
T  27332999 attttctctcataatcaataagggtacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcac 27333098  T
Q  309 ttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||||||||||||| ||||    
T  27333099 ttttgtttctaataaaaaggaccggaggaagta 27333131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 42 - 259
Target Start/End: Complemental strand, 27846636 - 27846418
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||  |||||| |||||| ||||||||||  || ||||||||||| | ||||||||    
T  27846636 tactccctctggtcccttatacaagaaacaaaagacataaaacatcaggaccaaggaaatactttgaaaatagttatcttcatttaatacacttctacat 27846537  T
Q  142 ttnnnnnnn-ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||        ||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  27846536 ttaaaaacaattccatgaatatccttaaattaattactatctattccaccaacttacttacttttaatattatctctcataataaataagggtacaaatg 27846437  T
Q  241 aaatttagcttcaaacata 259  Q
    ||||||| |||||||||||    
T  27846436 aaatttaacttcaaacata 27846418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 40 - 344
Target Start/End: Complemental strand, 34546951 - 34546647
Alignment:
Q  40 attactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctac 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||  || ||||||||||  |  | |||    
T  34546951 attactccctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatgcacctttac 34546852  T
Q  140 atttnnnnnnn---ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcaca 236  Q
    ||||          ||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||  | ||||||||| |||||||||| |    
T  34546851 atttaaaaaaaaaattc-atgaatacccctaaattaattactctttattccaccaacttacttacttttaatat--tttctcataataaataagggcaga 34546755  T
Q  237 aatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggag 335  Q
    ||||||| |||||||||||||||||| |||||||||||||  || ||||||||| |||        || |||||||| ||||||||||||||||| | ||    
T  34546754 aatgaaa-ttagcttcaaacatacttaaaacttgatcaatattttttataaaaaagacaaaaaaaattctcacttttatttctaataaaaaggacggaag 34546656  T
Q  336 ggagtacta 344  Q
    |||||||||    
T  34546655 ggagtacta 34546647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 161 - 338
Target Start/End: Complemental strand, 9411909 - 9411731
Alignment:
Q  161 acccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaaacatac 260  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  9411909 acccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaagtgaaatttaacttcaaatatac 9411810  T
Q  261 ttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggga 338  Q
    |||||||||| |||||  |||||||||||||||||       |||||||||||||||||||||||| ||||||||||||    
T  9411809 ttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaatggaccggaggga 9411731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 35428609 - 35428419
Alignment:
Q  37 tttattactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttc 136  Q
    |||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |   |||    
T  35428609 tttattactatctccggtcatttataaaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaacacgcttc 35428510  T
Q  137 tacatttnnnnnnnttctatgaatacccttaaattaattactctctattcc----atcaacttacttacttttaatattctctctcataat 223  Q
    || ||||       || ||||||||||||||||||||||||||| ||||||    ||||||||||||||||||||| ||||||||||||||    
T  35428509 tatattttaaaaatttttatgaatacccttaaattaattactctttattccatcaatcaacttacttacttttaattttctctctcataat 35428419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 77 - 290
Target Start/End: Complemental strand, 36834495 - 36834287
Alignment:
Q  77 cataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnttctatgaatacccttaaattaatta 176  Q
    ||||||| ||||| |||||  ||||||||| ||||||| ||| || |||||||| | ||||||||||       ||| |||||||||  |||||||||||    
T  36834495 cataaaatatcaagaccaaagaaatacattaaaaatagtcatctttatttaatacacttctacatttaaaaaatttc-atgaatacc--taaattaatta 36834399  T
Q  177 ctctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat 276  Q
    |||| ||||||| ||||||||||||||||||||||||||   ||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||    
T  36834398 ctctttattccaccaacttacttacttttaatattctctt--ataataaataagggtacaaatgaaatttagcttcaaacatacttgaaatttaatcaat 36834301  T
Q  277 cttcttataaaaag 290  Q
     |||||||||||||    
T  36834300 tttcttataaaaag 36834287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 4813646 - 4813945
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||  || |||||| ||||||||| |||||||  || ||||||||||| |  ||| |||    
T  4813646 tactccctccggtcctttatataagaaacaaaatacataaatca--aagaccaaggaaatacattaaaaatagttatcttcatttaatacacctctccat 4813743  T
Q  142 ttnnnnnnntt-ctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||       || | ||||||||| |||||||||||||| |  |||||| |||||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  4813744 ttaaatagttttccatgaatacctttaaattaattacttttcattccaccaacttacttacttttaatattccttctcataataaataagggcacaaatg 4813843  T
Q  241 aaatttagcttcaaacatacttgaaacttgatc-aatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggag 339  Q
    |||||||| ||||| || |||| ||| ||| || ||  ||||  ||||| |||||        | |||||||||||||| ||||||||||||||| ||||    
T  4813844 aaatttagtttcaagcacacttaaaaattggtcaaagtttctcgtaaaatggaccaaaaaaaatctcacttttgtttcttataaaaaggaccggatggag 4813943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 67 - 341
Target Start/End: Original strand, 23933236 - 23933512
Alignment:
Q  67 aaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnttctatgaataccctt 166  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||||   |||||| |||||||||  |||||||||       ||  |||||||||| |    
T  23933236 aaacaaaagacataaatcatcaagaccaaaaaaatacattgaaaataattattttcttttaatatacctctacatttaattttttttcatgaatacccct 23933335  T
Q  167 aaattaattactctctattccatcaacttacttactttt-aatattctctctcataattaataagggcacaaatgaaatttagcttcaaacatacttgaa 265  Q
    ||||||||||||||  |||| | |||||| |||| |||| |||||||||||  ||||| ||||||||||||||||||||||| ||||||||| | |||||    
T  23933336 aaattaattactcttgattctaccaactttcttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttcaaacacatttgaa 23933435  T
Q  266 acttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    | ||| |||||  || |||||| | ||||        |||||||||||||||||||||||| ||| | |||||||||    
T  23933436 aattggtcaatgtttattataatatggactaacaaaattttcacttttgtttctaataaaatggatcagagggagta 23933512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 163 - 341
Target Start/End: Original strand, 13879068 - 13879235
Alignment:
Q  163 ccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaaacatactt 262  Q
    |||||||||||||||||| | ||||| ||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||           |||    
T  13879068 ccttaaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggcacaaatgaaatttag-----------ctt 13879156  T
Q  263 gaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
     ||||||||||||||||||| |||||||||||        ||||||||||||||||||||||||||| |||||||||||    
T  13879157 taaacttgatcaatcttcttgtaaaaaggaccaaaaaaaatttcacttttgtttctaataaaaaggatcggagggagta 13879235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 35121293 - 35121171
Alignment:
Q  219 ataattaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttct 318  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||       ||  ||| |||||||||    
T  35121293 ataataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattcgcacatttgtttct 35121194  T
Q  319 aataaaaaggaccggagggagta 341  Q
    |||||||| || ||| |||||||    
T  35121193 aataaaaatgatcggggggagta 35121171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 11908172 - 11907972
Alignment:
Q  47 cctccggtcctttatacaagaaacaaaaga-cataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnn 145  Q
    |||||| |||| | |||||||||||||| | |||||| ||| || | ||||||||||||||||||||    ||||||||||||||  | | |||||||      
T  11908172 cctccgatcctctttacaagaaacaaaaaaacataaatcattaagatcaagaaaatacattgaaaatgactattttcatttaatacttctgtacatttaa 11908073  T
Q  146 nnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatt 245  Q
         ||| ||||||||| ||| ||||||||||||  |||||| ||||||| ||| ||||||||  |||||||||||| ||||| | |||||||||||||    
T  11908072 atttcttccatgaatacctttacattaattactcttgattccaccaacttatttatttttaata--ctctctcataataaataaagacacaaatgaaatt 11907975  T
Q  246 tag 248  Q
    |||    
T  11907974 tag 11907972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 9412365 - 9412284
Alignment:
Q  33 tttatttattactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatag 114  Q
    ||||| |||||||||||||| | | |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||    
T  9412365 tttatatattactccctccgattccttatacaagaaataaaagacataaaacatcaagaccaaggaaatacattgaaaatag 9412284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 35121446 - 35121359
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaata 130  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| || || ||||||||||| |||||| ||| |||||||||||    
T  35121446 tactccctccgatcctttatacaaaaaacaaaagacataaaacatcaagactaa-aaaatacattggaaatagtcatcttcatttaata 35121359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 1e-83; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 33314628 - 33314329
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||| |||||| ||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| | ||| ||||||||||| |||||||||     
T  33314628 tactacctccgatcctttatacaagaaacaaaatacataaaacatcaagaccaaggaaatacattgaaaatggtcatcttcatttaatacatttctacac 33314529  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||  |||||||  | ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  33314528 ttaaaaaaatttcatgaatattcctaaattaattactctttattccaccaacttgcttacttttaatattctctctcataataaatgagggcacaaatga 33314429  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagta 341  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||        | |||||||||||| ||||||||||||| ||||||||||    
T  33314428 aatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaataatctcacttttgtttataataaaaaggactggagggagta 33314329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 42 - 342
Target Start/End: Original strand, 40385127 - 40385431
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||  | ||||||||||||||| ||| ||||||||||| | ||||||||    
T  40385127 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaagaccaaagatatacattgaaaatagtcatcttcatttaatacacttctacat 40385226  T
Q  142 ttnnnnnnnt-tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatg 240  Q
    ||         || |||||||||| |||||||||| |||| |||||||  |||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  40385227 ttaaaaaataatccatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataagggcacaaatg 40385326  T
Q  241 aaatttagcttcaaacatacttgaaacttgatcaa---tcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggg 337  Q
    |||||||||||||||||||||||||||||| ||||   |||||||||||||||||||       || ||||||||||||||||||||||||||||||||     
T  40385327 aaatttagcttcaaacatacttgaaacttggtcaatcttcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagga 40385426  T
Q  338 agtac 342  Q
    |||||    
T  40385427 agtac 40385431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 151 - 345
Target Start/End: Original strand, 21262900 - 21263094
Alignment:
Q  151 ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagct 250  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||    
T  21262900 ttctataaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatgaaatttagct 21262999  T
Q  251 tcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagtactat 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||    
T  21263000 tcaaacatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattatcacttttgtttctaataaaaaggaccggagggagtactat 21263094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 42 - 339
Target Start/End: Original strand, 41174553 - 41174851
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||| ||||||||||||| ||||| ||    
T  41174553 tacttcctccggtcctttatgcaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatatacttctatat 41174652  T
Q  142 ttnnnnnnn--ttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaat 239  Q
    ||         ||| |||||||||| | |||||||| |||| |||| ||  |||||| ||||||||||  |||||||||||||| |||||||||||||||    
T  41174653 tttaaaaaaaattc-atgaatacccctcaattaattcctctttatttcactaacttatttacttttaactttctctctcataataaataagggcacaaat 41174751  T
Q  240 gaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggag 339  Q
    |||||||||||| ||| |||||||||||||| |||||||||||||||||||||||       || ||||||||||||||| |||||||||||||||||||    
T  41174752 gaaatttagcttaaaatatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctattaaaaaggaccggagggag 41174851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 24868767 - 24868467
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||  || ||||||||||| |  |||| |     
T  24868767 tactccatccgatcctttatacaagaaacaaaagacataaaacatcaagtctaagaaaatacattgaaaatagtaatcttcatttaatacacctctataa 24868668  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| || || |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  24868667 ttaagaaaattccattaacacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggtacaaatga 24868568  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagt 340  Q
    |||||| |||||||||||||||||||||| |||||  |||||||||||| |||        || |||||||||||||||||||||||||  |||||||||    
T  24868567 aatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaagacaaaaaaaattctcacttttgtttctaataaaaaggatgggagggagt 24868468  T
Q  341 a 341  Q
    |    
T  24868467 a 24868467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 42 - 338
Target Start/End: Original strand, 3097441 - 3097741
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||| | |||| |||||||||||||||||  || ||||||||||| | ||||||||    
T  3097441 tactccctccggtcctttatacaagaaacata-gacataaaacatcaagatcaaggaaatacattgaaaatagtaatcttcatttaatacacttctacat 3097539  T
Q  142 ttnnnnnnnt----tctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaa 237  Q
    ||            || ||| |||||| |||||||| | |||| |||||||  |||||| ||||||||||| ||| |||||||||| |||||||||||||    
T  3097540 ttaaaaaaaaaaaatccatgtatacccctaaattaaatcctctttattccactaacttatttacttttaattttcactctcataataaataagggcacaa 3097639  T
Q  238 atgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggac-cnnnnnnnttttcacttttgtttctaataaaaaggaccggagg 336  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||          | ||||||||||||||||||||||||||||||||    
T  3097640 atgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaaaatctcacttttgtttctaataaaaaggaccggagg 3097739  T
Q  337 ga 338  Q
    ||    
T  3097740 ga 3097741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 21262495 - 21262596
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||   ||||||||    
T  21262495 tactacctccggtcctttataaaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacat 21262594  T
Q  142 tt 143  Q
    ||    
T  21262595 tt 21262596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 4238039 - 4237918
Alignment:
Q  155 atgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaaatttagcttcaa 254  Q
    |||||||||| |||||||||||||||  |||||| ||| ||||||  ||||| |||||| ||||||||| ||||| ||||||||||||||||| ||||||    
T  4238039 atgaatacccctaaattaattactcttgattccaccaatttacttcattttattattctatctcataataaataacggcacaaatgaaatttaacttcaa 4237940  T
Q  255 acatacttgaaacttgatcaat 276  Q
    |||| | ||||| || ||||||    
T  4237939 acatccatgaaaatttatcaat 4237918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 166 - 329
Target Start/End: Original strand, 2934905 - 2935070
Alignment:
Q  166 taaattaattactctctattccatcaacttacttactttt-aatattctctctcataattaataagggcacaaatgaaatttagcttcaaacatacttga 264  Q
    ||||||||||||| |  |||||  ||| ||| |||||||| ||||  |||||||||||| |||||||| | |||||||||||| ||||||| | |||| |    
T  2934905 taaattaattacttttgattccggcaatttatttactttttaataacctctctcataataaataagggtataaatgaaatttaacttcaaatacacttaa 2935004  T
Q  265 aacttgatcaatc-ttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaagga 329  Q
    || ||| | |||| ||||||||||||||||         |||||||||||||||| ||||||||||    
T  2935005 aaattggtaaatctttcttataaaaaggactcaaaataatttcacttttgtttcttataaaaagga 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 138; Significance: 9e-72; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 7005 - 6703
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||| |||| | |||||| |||||||||||||||||||||||| || |  ||| |||||||||||||||||  || ||||||||||| || |||||||    
T  7005 tactccatccgattctttattcaagaaacaaaagacataaaacattaagattaaggaaatacattgaaaatagttatcttcatttaatacatctctacat 6906  T
Q  142 ttnnnnnnntt--ctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaat 239  Q
    ||       ||  ||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  6905 ttaatttttttttctatgaatatccttaaattaattactctttattctaccaacttacttacttttaatattctttctcataataaataagcgcacaaat 6806  T
Q  240 gaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggaggga 338  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||       |||| |||||||||||||||||||||||||||| |||    
T  6805 gaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgaccaaattttttttaacttttgtttctaataaaaaggaccggatgga 6706  T
Q  339 gta 341  Q
    |||    
T  6705 gta 6703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 258218 - 258509
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  || ||||||||||| |  |||| ||    
T  258218 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtaatcttcatttaatacacctctatat 258317  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| || || |||| |||||||||||||||          |||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  258318 ttaagaaaattccatcaacacccctaaattaattactcta---------aacttacttaattttaatattctctctcataataaataaaggcacaaatga 258408  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttttcacttttgtttctaataaaaaggaccggagggagt 340  Q
    |||||| |||||||||||||| ||||||| |||||  |||||||||||||||||       || |||||||||||||||||||||||||||||| |||||    
T  258409 aatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggacctaaaaaattctcacttttgtttctaataaaaaggaccggatggagt 258508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 93; Significance: 7e-45; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 42 - 275
Target Start/End: Complemental strand, 30710 - 30477
Alignment:
Q  42 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacat 141  Q
    |||||||||| || |||| |  ||||||||||||||||||| |||||| ||| || |||||||||||||||||  ||||| |||||||| |  ||| |||    
T  30710 tactccctcctgtgctttttctaagaaacaaaagacataaatcatcaagaccgaggaaatacattgaaaatagttattttaatttaatacacctctgcat 30611  T
Q  142 ttnnnnnnnttctatgaatacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatga 241  Q
    ||       ||| || ||||||| |||||||||||||||  |||||  |||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  30610 ttaaattttttccataaatacccctaaattaattactcttgattccgccaacttacttacttttaatattgtctctcataataaataagggcacaaatga 30511  T
Q  242 aatttagcttcaaacatacttgaaacttgatcaa 275  Q
    ||||||  |||||||| |||||||| ||| ||||    
T  30510 aatttaatttcaaacaaacttgaaaattggtcaa 30477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 30741 - 30919
Alignment:
Q  64 aagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaataggcattttcatttaatatatttctacatttnnnnnnnttctatg-----a 158  Q
    ||||||||||||||||||| |||||| |||||| ||||| |||||||||||  ||||||| ||||||||  || ||||||       ||| |||     |    
T  30741 aagaaacaaaagacataaatcatcaagaccaaggaaataaattgaaaatagttattttca-ttaatatacctcaacatttaaattttttccatgaataca 30839  T
Q  159 atacccttaaattaattactctctattccatcaacttacttacttttaatattctctctcataattaataagggcacaaatgaa 242  Q
    |||||| |||||||||||||||  |||||| ||    || ||||||||||||||||||||||||| ||||||||| || |||||    
T  30840 atacccctaaattaattactcttgattccacca----acatacttttaatattctctctcataataaataagggcgcacatgaa 30919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University