View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14461_low_10 (Length: 223)
Name: NF14461_low_10
Description: NF14461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14461_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 32062428 - 32062615
Alignment:
| Q |
13 |
caaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatcaacatgaaggaagcaatggatgacataaacaacatgtttgggaagccaataga |
112 |
Q |
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| T |
32062428 |
caaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatcaacatgaaggaagcaatggatgacataaacaacatgtttgggaagccaataga |
32062527 |
T |
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| Q |
113 |
ctttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgcc |
200 |
Q |
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| T |
32062528 |
ctttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttttcaatccttgcc |
32062615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 32062652 - 32062749
Alignment:
| Q |
102 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgc |
199 |
Q |
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| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgc |
32062749 |
T |
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