View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14461_low_2 (Length: 482)
Name: NF14461_low_2
Description: NF14461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14461_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 36596689 - 36597150
Alignment:
| Q |
18 |
ctaacagcacgtccaaattacacaacattaattaactagttaaccnnnnnnnnnctttcaaatttcttagtttccaacctctcaatgtgggtaa-ctaca |
116 |
Q |
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| T |
36596689 |
ctaaccgcacgtccaaattacacaacattaattaattagttaacctttttttt-ctttcaaatttcttagtttccaacctctcaatgtgggtaaactaca |
36596787 |
T |
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| Q |
117 |
ttaannnnnnnnnnagcactcaaaatctctcaatacactctaagtagtatactagatatttgtagatgatat----atccagctcc----taattaatta |
208 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
36596788 |
ttaattttttatttagcactcaaaatctc--aatacactctaagtagtatactagatatttgtagatgatatatccatccagctcctaattaattaatta |
36596885 |
T |
|
| Q |
209 |
atggagtacgaatttggtttgaatgtgaatctagaactagaagcttgactttgtccattcatgcaatagaagtaagtaggtggctactcacgaatttatt |
308 |
Q |
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| T |
36596886 |
atgtagtacgaatttggtttgaatgtgaatctagaactagaagcttgactttgtccattcatgcaatagaagtaagtaggtggctactcacgaatttatt |
36596985 |
T |
|
| Q |
309 |
catggtttttcacggtgagtcatcttcagctttacacgtaaggagtgcaaagaaaagtacatatttcatgtataatatatgcacgacaaattattcagtt |
408 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36596986 |
catggtttttcacggtgagtcatcttcaactttacacgtaaggagtgcaaagaaaagtacatatttcatgtataatatatgcacaacaaattattcagtt |
36597085 |
T |
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| Q |
409 |
attatttaaacattctattctaccaaaagaataaataataaacattcttcttttctcttgatgat |
473 |
Q |
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| T |
36597086 |
attatttaaacattctattctaccaaaaaaataaataataaacattcttcttttctcttgatgat |
36597150 |
T |
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