View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14461_low_3 (Length: 403)

Name: NF14461_low_3
Description: NF14461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14461_low_3
NF14461_low_3
[»] chr5 (3 HSPs)
chr5 (40-301)||(973565-973825)
chr5 (293-393)||(974240-974340)
chr5 (51-148)||(42206177-42206274)
[»] chr4 (3 HSPs)
chr4 (33-143)||(6779723-6779833)
chr4 (40-146)||(54035733-54035839)
chr4 (33-138)||(29599429-29599534)
[»] chr1 (2 HSPs)
chr1 (33-143)||(45135230-45135340)
chr1 (70-116)||(37087075-37087121)
[»] chr7 (1 HSPs)
chr7 (69-146)||(34711711-34711788)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 40 - 301
Target Start/End: Original strand, 973565 - 973825
Alignment:
Q  40 tacccactttaaaacctttgcatgcttcgaactgttgcttcttgctattcttctttcttgggaccacaagttaaaatagttagccaatatctcttgctaa 139  Q
    ||||||| ||||||||||||||||||||| || ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  973565 tacccaccttaaaacctttgcatgcttcggaccgttacttcttgcttttcttctttgttgggaccacaagttaaaatagttagccaatgtctcttgctaa 973664  T
Q  140 atcaacagtgtccatagataataaggatatcttagtataaatagttcgaacattctaaaaatattaaggttgtcctagttattatgtctttattttgtat 239  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  973665 atcaacagtgtccatcgataata-ggatatcttagtataaatagttcgaacattctaaaaatattaaggttgtcctagttattatgtctttattttgtat 973763  T
Q  240 tgtaatattcttgaatgttacatgatattcttcgcttcttaaaagttccataatattcttta 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  973764 tgtaatattcttgaatgttacatgatattcttcgcttcttaaaagttccataatattcttta 973825  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 293 - 393
Target Start/End: Original strand, 974240 - 974340
Alignment:
Q  293 tattctttatcatcctttatcattcaccatcacataatataagttataaacattgtggtgactttatttcattagtttatgatatacaatacagagagat 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  974240 tattctttatcatcctttatcattcaccatcacataatataagttataaacattgtggtgactttatttcattagtttatgatatacaatatatagagat 974339  T
Q  393 g 393  Q
    |    
T  974340 g 974340  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 42206177 - 42206274
Alignment:
Q  51 aaacctttgcatgcttcgaactgttgcttcttgctattcttctttcttgggaccacaagttaaaatagttagccaatatctcttgctaaatcaacagt 148  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||    
T  42206177 aaacctttgcatgctttggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaatcaacagt 42206274  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 6779723 - 6779833
Alignment:
Q  33 ctagagatacccactttaaaacctttgcatgcttcgaactgttgcttcttgctattcttctttcttgggaccacaagttaaaatagttagccaatatctc 132  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||| ||||||    
T  6779723 ctagaggtacccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccattatctc 6779822  T
Q  133 ttgctaaatca 143  Q
    |||||||||||    
T  6779823 ttgctaaatca 6779833  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 54035733 - 54035839
Alignment:
Q  40 tacccactttaaaacctttgcatgcttcgaactgttgcttcttgctattcttctttcttgggaccacaagttaaaatagttagccaatatctcttgctaa 139  Q
    ||||||| |||||||||||||  |||||  |||||||||||||||| ||||||||||||||||||||||||| |||  ||| ||   | |||||||||||    
T  54035733 tacccaccttaaaacctttgctcgcttcagactgttgcttcttgcttttcttctttcttgggaccacaagttgaaaaggttggcatgtgtctcttgctaa 54035832  T
Q  140 atcaaca 146  Q
    |||||||    
T  54035833 atcaaca 54035839  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 29599429 - 29599534
Alignment:
Q  33 ctagagatacccactttaaaacctttgcatgcttcgaactgttgcttcttgctattcttctttcttgggaccacaagttaaaatagttagccaatatctc 132  Q
    |||||| ||||||| || |||||||||||||||||  |||||||||||||||| ||||| |||||||| |||||||||| ||||  || |||| | ||||    
T  29599429 ctagaggtacccaccttgaaacctttgcatgcttcagactgttgcttcttgcttttcttatttcttggaaccacaagttgaaatgattggccagtgtctc 29599528  T
Q  133 ttgcta 138  Q
    ||||||    
T  29599529 ttgcta 29599534  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 45135230 - 45135340
Alignment:
Q  33 ctagagatacccactttaaaacctttgcatgcttcgaactgttgcttcttgctattcttctttcttgggaccacaagttaaaatagttagccaatatctc 132  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||| ||||||    
T  45135230 ctagaggtacccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctc 45135329  T
Q  133 ttgctaaatca 143  Q
    |||||||||||    
T  45135330 ttgctaaatca 45135340  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 37087075 - 37087121
Alignment:
Q  70 actgttgcttcttgctattcttctttcttgggaccacaagttaaaat 116  Q
    |||| ||||||||||| |||||||||||||||||||| |||| ||||    
T  37087075 actgctgcttcttgctcttcttctttcttgggaccactagttgaaat 37087121  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 34711711 - 34711788
Alignment:
Q  69 aactgttgcttcttgctattcttctttcttgggaccacaagttaaaatagttagccaatatctcttgctaaatcaaca 146  Q
    ||||| ||||||||||| |||||||||||||||||||| |||| |||| ||| |||  | |||||||  |||||||||    
T  34711711 aactgctgcttcttgctcttcttctttcttgggaccaccagttgaaatggttggccggtgtctcttgaaaaatcaaca 34711788  T

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