View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14461_low_4 (Length: 388)

Name: NF14461_low_4
Description: NF14461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14461_low_4
NF14461_low_4
[»] chr5 (1 HSPs)
chr5 (18-182)||(41275847-41276011)
[»] chr8 (5 HSPs)
chr8 (261-372)||(479689-479800)
chr8 (266-358)||(466743-466835)
chr8 (271-351)||(455041-455121)
chr8 (270-314)||(474232-474276)
chr8 (266-365)||(446009-446108)
[»] chr2 (1 HSPs)
chr2 (271-356)||(27493536-27493624)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 41275847 - 41276011
Alignment:
Q  18 gaaacaagctcactgatgtaataaggcagccaccaaaatttggcaaagggagtagctatgttatacaaaaggaaaataaaatgaacaaagaagatgaaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  41275847 gaaacaagctcactgatgtaataaggcagccaccaaaatttggcaaagggagtagctatgttctacaaaaggagaataaaatgaacaaagaagatgaaga 41275946  T
Q  118 agataatacccctctcatggaaactccagccagactagttttttccaagccaaacaagtcacagg 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41275947 agataatacccctctcatggaaactccagccagactagttttttccaagccaaacaagtcacagg 41276011  T

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Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 479689 - 479800
Alignment:
Q  261 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479689 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 479788  T
Q  361 taataataatat 372  Q
    ||||||||||||    
T  479789 taataataatat 479800  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 466743 - 466835
Alignment:
Q  266 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctct 358  Q
    |||| |||||||| |||||||| |||||||| ||||||||||||||||| ||| | ||| | ||||||||||||||||| |||||||||||||    
T  466743 ttgacaggagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttccattctct 466835  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 455041 - 455121
Alignment:
Q  271 aggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc 351  Q
    |||||||| ||| |||||||||||||||||||||  |||||||| | | | ||| | ||||||||||||||||| ||||||    
T  455041 aggagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc 455121  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 474232 - 474276
Alignment:
Q  270 taggagaaattctggctcttattccttaaatttaaggagtttttc 314  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||    
T  474232 taggagaaactctgcctcttattccttaaatttaaggagtttttc 474276  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 446009 - 446108
Alignment:
Q  266 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctagtaata 365  Q
    |||| |||||||| |||| ||| || |||||||| |||||||||||||| | | ||||| | || ||||||||| |||| |||| |||| ||||||||||    
T  446009 ttgacaggagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttctagtaata 446108  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 356
Target Start/End: Complemental strand, 27493624 - 27493536
Alignment:
Q  271 aggagaaattctggctctt---attccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattct 356  Q
    ||||||||||||||||| |   ||||||||||||||| ||||||||||| | ||||| | || |||||| ||||||| ||||| |||||    
T  27493624 aggagaaattctggctcctcccattccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttctattct 27493536  T

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