View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14461_low_5 (Length: 360)
Name: NF14461_low_5
Description: NF14461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14461_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 15288560 - 15288223
Alignment:
| Q |
18 |
ttttgtaggtaaatatgcatgcataattaa---gttcttttaaatatcatgctagttgagattgtcatgaactctaactagcaatttgttatactaatta |
114 |
Q |
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| T |
15288560 |
ttttgtaggtaaatatgcatgcataattaattagttcttttaaatatcatgctagttgagattgtcatgaactctaactagcaatttgttatactaatta |
15288461 |
T |
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| Q |
115 |
aggacttcttagtttactaatttttatgtaatatattttttgtagggaagaacaaggtttatgatcatgagaaatcatgtgactattcaaatggagattg |
214 |
Q |
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| T |
15288460 |
aggacttcttagtttactaatttttatgtaatatattttttgtagggaagaacaaggtttatgatcatgagaaatcatgtgactattcaaatggagattg |
15288361 |
T |
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| Q |
215 |
ggttagtgacatgagaggccctatatacaatgtcaccacatgtggcacaatcaaagagagtgagagatgcatcacaaatggtagacctgatttaggttat |
314 |
Q |
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| T |
15288360 |
ggttagtgacatgagaggccctttatacaatgtcaccacatgtggtacaatcaaagaaagtgagagatgcatcacaaatggtagacctgatttaggttat |
15288261 |
T |
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| Q |
315 |
ctttattggagatggaagccaagtgagtataatctacc |
352 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
15288260 |
ctttattggagatggaagccaagtgagtgtaatctacc |
15288223 |
T |
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