View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14462_low_2 (Length: 237)
Name: NF14462_low_2
Description: NF14462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14462_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34506069 - 34505849
Alignment:
| Q |
1 |
agccagtatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506069 |
agccagtatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctcc |
34505970 |
T |
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| Q |
101 |
aaaaaggcgcggtcattcttggatctcaggtattatatgatcactattttttgtagcatttggaaaattttataatcagttaataaagggtcattgatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34505969 |
aaaaaggcgcggtcattcttggatctcaggtattatacgatcactattttttgtagcatttggaaaattttataatcagttaataaagggtcattgatat |
34505870 |
T |
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| Q |
201 |
gatacaggataaatcagaatg |
221 |
Q |
| |
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|||||||||| ||||| |||| |
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| T |
34505869 |
gatacaggatgaatcacaatg |
34505849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45068636 - 45068417
Alignment:
| Q |
1 |
agccagtatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctcc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45068636 |
agccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaacaggaagcttcaatctcacaagccatttcactctttttctcc |
45068537 |
T |
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| Q |
101 |
aaaaaggcgcggtcattcttggatctcaggtattatatgatcactatt-ttttgtagca-tttggaaaattttataatcagttaataaagggtcattgat |
198 |
Q |
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| T |
45068536 |
aaaagggtgctgtcattcttgcatctcaggtataatataaagacttttgttttgtagtattttttaaaattttataatca---attaaagggtcatttat |
45068440 |
T |
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| Q |
199 |
atgatacaggataaatcagaatg |
221 |
Q |
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|||||||||||| |||||||||| |
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| T |
45068439 |
atgatacaggatgaatcagaatg |
45068417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 45083688 - 45083556
Alignment:
| Q |
1 |
agccagtatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctcc |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45083688 |
agccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaactggaagcttcaatctcacaagccatttcactctttttctcc |
45083589 |
T |
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| Q |
101 |
aaaaaggcgcggtcattcttggatctcaggtat |
133 |
Q |
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|||||| || |||||||||| ||||||||||| |
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| T |
45083588 |
aaaaagatgctgtcattcttgcatctcaggtat |
45083556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 45079397 - 45079265
Alignment:
| Q |
1 |
agccagtatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctcc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45079397 |
agccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctcc |
45079298 |
T |
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| Q |
101 |
aaaaaggcgcggtcattcttggatctcaggtat |
133 |
Q |
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|||||| || || ||||||||||||||||||| |
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| T |
45079297 |
aaaaagatgctgttattcttggatctcaggtat |
45079265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 45076273 - 45076141
Alignment:
| Q |
1 |
agccagtatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctcc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45076273 |
agccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctcc |
45076174 |
T |
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| Q |
101 |
aaaaaggcgcggtcattcttggatctcaggtat |
133 |
Q |
| |
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|||||| | |||||||||| ||||||||||| |
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| T |
45076173 |
aaaaagattctgtcattcttgcatctcaggtat |
45076141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 45079229 - 45079178
Alignment:
| Q |
149 |
ttttgtagcatttggaaaattttataatcagttaataaagggtcattgatat |
200 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||| |||||| |||| |
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| T |
45079229 |
ttttgtagcatttggaaaattttagaattagttaataaagtgtcatttatat |
45079178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 41332905 - 41333000
Alignment:
| Q |
36 |
tgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctccaaaaaggcgcggtcattcttggatctcaggt |
131 |
Q |
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|||||||||||| | |||||| ||||| |||||||||||||| || ||||||||| | || || || |||| || ||||||||||| |||||||| |
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| T |
41332905 |
tgttccaccaggaagatggttgactggtagcttcaatctcaccagtcatttcactttattcctacacaaagatgctgtcattcttggttctcaggt |
41333000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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