View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14463_low_1 (Length: 659)

Name: NF14463_low_1
Description: NF14463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14463_low_1
NF14463_low_1
[»] chr1 (9 HSPs)
chr1 (13-644)||(31193528-31194159)
chr1 (157-644)||(31015374-31015850)
chr1 (13-115)||(51684368-51684472)
chr1 (13-115)||(51685760-51685864)
chr1 (24-104)||(43058800-43058880)
chr1 (13-109)||(46066533-46066628)
chr1 (38-95)||(12390001-12390058)
chr1 (13-98)||(45157204-45157289)
chr1 (38-115)||(35067022-35067101)
[»] chr7 (3 HSPs)
chr7 (13-115)||(21505418-21505520)
chr7 (24-98)||(31659644-31659718)
chr7 (13-98)||(47369802-47369887)
[»] chr8 (10 HSPs)
chr8 (13-97)||(2378882-2378966)
chr8 (24-115)||(8388466-8388557)
chr8 (13-115)||(32207320-32207422)
chr8 (13-115)||(43661267-43661371)
chr8 (13-96)||(30570251-30570333)
chr8 (15-98)||(32968477-32968560)
chr8 (15-98)||(32973933-32974016)
chr8 (13-115)||(22220390-22220494)
chr8 (13-61)||(1824073-1824121)
chr8 (13-61)||(1858518-1858566)
[»] chr4 (10 HSPs)
chr4 (13-97)||(37728560-37728644)
chr4 (15-115)||(3927668-3927770)
chr4 (13-115)||(50909667-50909772)
chr4 (13-98)||(10448255-10448340)
chr4 (38-115)||(1834121-1834200)
chr4 (41-115)||(1964464-1964540)
chr4 (24-96)||(31600991-31601063)
chr4 (16-60)||(33310087-33310131)
chr4 (24-98)||(31599810-31599884)
chr4 (24-115)||(26421628-26421720)
[»] scaffold0586 (1 HSPs)
scaffold0586 (13-87)||(6375-6449)
[»] scaffold0019 (2 HSPs)
scaffold0019 (13-96)||(60113-60196)
scaffold0019 (13-61)||(61454-61502)
[»] chr6 (6 HSPs)
chr6 (13-104)||(1829598-1829689)
chr6 (43-115)||(3333051-3333125)
chr6 (16-95)||(16704495-16704574)
chr6 (40-106)||(30494569-30494635)
chr6 (38-115)||(30495718-30495795)
chr6 (66-115)||(16415581-16415632)
[»] chr3 (14 HSPs)
chr3 (43-98)||(46721245-46721300)
chr3 (15-95)||(46719965-46720045)
chr3 (41-115)||(51038813-51038889)
chr3 (13-76)||(534542-534605)
chr3 (24-115)||(12700177-12700268)
chr3 (24-98)||(18442652-18442726)
chr3 (24-98)||(19487726-19487800)
chr3 (24-98)||(28263117-28263191)
chr3 (24-115)||(54540796-54540889)
chr3 (13-98)||(19984870-19984955)
chr3 (38-115)||(53901408-53901485)
chr3 (38-98)||(22776832-22776892)
chr3 (24-115)||(28262195-28262287)
chr3 (25-97)||(49216269-49216341)
[»] chr2 (7 HSPs)
chr2 (13-115)||(18300720-18300821)
chr2 (13-63)||(22587949-22587999)
chr2 (13-98)||(22587522-22587606)
chr2 (43-87)||(11996739-11996783)
chr2 (13-57)||(18299435-18299479)
chr2 (66-115)||(28365514-28365565)
chr2 (38-98)||(32739644-32739704)
[»] chr5 (5 HSPs)
chr5 (13-114)||(42195137-42195238)
chr5 (24-115)||(19752914-19753006)
chr5 (41-98)||(36486511-36486568)
chr5 (43-104)||(38834102-38834162)
chr5 (38-98)||(36485321-36485381)
[»] scaffold0632 (1 HSPs)
scaffold0632 (24-115)||(3314-3406)
[»] scaffold0049 (1 HSPs)
scaffold0049 (24-96)||(7421-7493)
[»] scaffold2034 (1 HSPs)
scaffold2034 (38-95)||(998-1055)
[»] scaffold0321 (1 HSPs)
scaffold0321 (42-95)||(18752-18805)
[»] scaffold0112 (1 HSPs)
scaffold0112 (24-115)||(37150-37242)


Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 13 - 644
Target Start/End: Complemental strand, 31194159 - 31193528
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgcaatt 112  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||  ||    
T  31194159 agatgcaaaaaggctaaatcttaaagggccaaaattttagtttttgtacatgtggggccaaattcgtaactttttaaaagttagggtgaaaagtgccctt 31194060  T
Q  113 tagaaaaataaaataaaattcaaactttcaaatatgttacgtagcttcaatttctaagtccacgcgccacggagagggaaaattgcgagcgagctacaag 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31194059 tagaaaaataaaataaaattcaaactttcaaatatgttaggtagcttcaatttctaagtccacgcgccacggagagggaaaattgcgagcgagctacaag 31193960  T
Q  213 aatatccacaaaaatggcgattttgcagggtcttcggatctcaatttcgctttcacaaactcttccaccactcctccaatcaggcaaaacaaagacaagc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31193959 aatatccacaaaaatggcgattttgcagggtcttcggatctcaatttcgctttcacaaactcttccaccactcctccaatcaggcaaaacaaagacaagc 31193860  T
Q  313 aaaacttcctcattccatcaatctcatttctttctctctcatttttcgtcgcatttccatcgaattcgaatctgttacgaacttcaatttttgcacaatt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31193859 aaaacttcctcattccatcaatctcatttctttctctctcattttacgtcgcatttccatcgaattcgaatctgttacgaacttcaatttttgcacgatt 31193760  T
Q  413 acgttacttaggtttgatgttcaatgcgtgtttgatcgatgatttcaatttgttgaaaatgtacacacgcatgatactgttggacggtgatttctgttcg 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31193759 acgttacttaggtttgatgttcaatgcgtgtttgatcgatgatttcaatttgttgaaaatgtacacacgcatgatactgttggacggtgatttctgttca 31193660  T
Q  513 gcctaggttaaaatccaggaaatggtaagttagctcttaattgttctataatagtttcagtatgcagcctagtggatttaatttggagcaaaaatgtatg 612  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31193659 gcctaggttaaaatccaggaaatggtaagttaggtcttaattgttctataatagtttccgtatgcagcctagtggatttaatttggagcaaaaatgtatg 31193560  T
Q  613 ctattatgttaatgttatgatattgaataagt 644  Q
    ||||||| ||||||||||||||||||||||||    
T  31193559 ctattatcttaatgttatgatattgaataagt 31193528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 157 - 644
Target Start/End: Complemental strand, 31015850 - 31015374
Alignment:
Q  157 cttcaatttctaagtccacgcgccacggagagggaaaattgcgagcgagctacaagaatatccacaaaaatggcgattttgcagggtcttcggatctcaa 256  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31015850 cttctatttctaagtccaagcgccacggagagggaaaagtgcgagcca----caagaatgtccacaaaaatggcgattttgcagggtcttcggatctcaa 31015755  T
Q  257 tttcgctttcacaaactcttccaccactcctccaatcaggcaaaacaaagacaagcaaaacttcctcattccatcaatctcatttctttctctctcattt 356  Q
    ||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| ||||||||  || ||||||||||    
T  31015754 tttcgattccacaaactcttccaccactcctccaatcgcgcaaaacaaagacaagcaaaactccctcattccatcattctcattttcttttctctcattt 31015655  T
Q  357 ttcgtcgcatttccatcgaattcgaatctgttacgaacttcaatttttgcacaattacgttacttaggtttgatgttcaatgcgtgtttgatcgatgatt 456  Q
    ||  ||   |||  | ||||||||||||||||||||| |||| ||||||||| |||||  ||||| |  || |||||||||| |||||||||||||||||    
T  31015654 tt--tc---ttt--agcgaattcgaatctgttacgaatttcattttttgcacgattactatacttcgagttcatgttcaatgtgtgtttgatcgatgatt 31015562  T
Q  457 tcaatttgttgaaaatgtacacacgcatgatactgttggacggtgatttctgttcggcctaggttaaaatccaggaaatggtaagttagctcttaattgt 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  31015561 tcaatttgttgaaaatgtacacacgcatgatactgttggacggtgatttctgttcagcctaggttaaaatccaggaaatggtaagttaggtcttaattgt 31015462  T
Q  557 tctataatagtttcagtatgcagcctagtggatttaatttggagcaaaaatgtatgctattatgttaatgttatgatattgaataagt 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31015461 tctataatagtttcagtatgcagcctagtggatttaatttggagcaaaaatgtgtgctattatgttaatgttatgatattgaataagt 31015374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 51684472 - 51684368
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta--gggtgaaaagtgcaa 110  Q
    |||||||||  ||||||||| ||  ||||||||||| |||||||| |||||  |||| |||||| | ||||||||||||||||  ||| ||||||||||     
T  51684472 agatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacatagggggccaaaattgcaactttttaaaagttaaggggggaaaagtgcac 51684373  T
Q  111 tttag 115  Q
    |||||    
T  51684372 tttag 51684368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 51685760 - 51685864
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtt--agggtgaaaagtgcaa 110  Q
    |||||||||  ||||||||| ||  ||| ||||||| ||||||||||||||   ||| |||||||| |||||||| ||||||  |||| ||||||||||     
T  51685760 agatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacatagagggccaaaatcgcaactttttgaaagttagagggggaaaagtgcac 51685859  T
Q  111 tttag 115  Q
    |||||    
T  51685860 tttag 51685864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 43058880 - 43058800
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaa 104  Q
    ||||||||| || ||||| |||||| |||||||||||| |  ||||||||||| | || ||||| |||||||||| |||||    
T  43058880 ggctaaatcttagagggctaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttcaaagttagggggaaaa 43058800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 46066628 - 46066533
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgca 109  Q
    |||||||||  ||||||||| ||  |||| |||||| ||||||||||||||  ||||  ||||||| |||||||| |||||||||  ||||||||||    
T  46066628 agatgcaaattggctaaatcttag-gggctaaaattgtagtttttgtacataaggggctaaaatcgcaactttttgaaagttaggaggaaaagtgca 46066533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 12390001 - 12390058
Alignment:
Q  38 gggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta 95  Q
    ||||||||||| || |||||||||||  ||| ||||||||| |||||||| |||||||    
T  12390001 gggccaaaattataatttttgtacataggggatcaaaatcgcaactttttgaaagtta 12390058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 45157204 - 45157289
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    |||||||||  || |||||| ||||||| ||||||| ||||||||||||||  |||| |||||| | || ||||| ||| ||||||    
T  45157204 agatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggccaaaattgcaagtttttgaaacttaggg 45157289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 35067022 - 35067101
Alignment:
Q  38 gggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta--gggtgaaaagtgcaatttag 115  Q
    ||||||||||| |||||||||| |||  |||| |||||||| |||||||| ||| |||  ||| |||||||||| |||||    
T  35067022 gggccaaaattgtagtttttgttcatagggggccaaaatcgcaactttttgaaacttaaggggggaaaagtgcactttag 35067101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 21505520 - 21505418
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgcaatt 112  Q
    |||||||||  ||||||||| ||  ||| ||||||| ||||||||||| ||  |||| |||||||| |||||||| |||||||||| |||||||||| ||    
T  21505520 agatgcaaaggggctaaatcttatggggtcaaaattgtagtttttgtatatcgggggccaaaatcgcaactttttgaaagttagggggaaaagtgcactt 21505421  T
Q  113 tag 115  Q
    |||    
T  21505420 tag 21505418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 31659718 - 31659644
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    ||||||||| ||  ||||||||||| |||||||||||| |  ||||||||||| |||| ||||| ||||||||||    
T  31659718 ggctaaatcttagggggccaaaattgtagtttttgtacttagggggtcaaaattgtaagtttttgaaagttaggg 31659644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 47369887 - 47369802
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    |||||||||  ||||||||| ||| ||||||||||| |||||||||||| | || ||  ||||| | || ||||| ||||||||||    
T  47369887 agatgcaaaggggctaaatcttaaggggccaaaattatagtttttgtacttatgaggctaaaattgcaagtttttgaaagttaggg 47369802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 2378966 - 2378882
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagg 97  Q
    ||||||||| |||||| ||| ||| ||| ||||||| | ||||||||| ||  ||| ||||||||||||||||||||||||||||    
T  2378966 agatgcaaataggctagatcttaaggggtcaaaattatggtttttgtatataggggatcaaaatcgtaactttttaaaagttagg 2378882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 8388557 - 8388466
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgcaatttag 115  Q
    ||||||||| ||  ||||||||||| ||||||||||||||  ||||  ||||| | ||||||||||||||||||| | |||||||| |||||    
T  8388557 ggctaaatcttagggggccaaaattatagtttttgtacatagggggctaaaattgcaactttttaaaagttaggggggaaagtgcactttag 8388466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 32207320 - 32207422
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgcaatt 112  Q
    ||||||||| |||||||||| |||  |||||||||| |||||||||||| |  || |||||||| | || ||||| || ||||||| | |||||||| ||    
T  32207320 agatgcaaagaggctaaatcttaagaggccaaaattgtagtttttgtacttagggcgtcaaaattgcaagtttttgaaggttaggggggaaagtgcactt 32207419  T
Q  113 tag 115  Q
    |||    
T  32207420 tag 32207422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 43661371 - 43661267
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaac-tttttaaaagttagggt-gaaaagtgcaa 110  Q
    |||||||||  ||||||||| ||  ||||||||||| ||||||||||||||  |||  |||||| ||||| ||||||||| | ||||| ||||||||||     
T  43661371 agatgcaaaggggctaaatcttagggggccaaaattatagtttttgtacataagggaccaaaattgtaacttttttaaaattaagggtagaaaagtgcac 43661272  T
Q  111 tttag 115  Q
    |||||    
T  43661271 tttag 43661267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 30570251 - 30570333
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttag 96  Q
    |||||||||| ||||||||| ||  |||||||||||||| |||||||||||   || ||||||| | |||||||||||| ||||    
T  30570251 agatgcaaaagggctaaatcttagggggccaaaattctaatttttgtacat-aaggatcaaaattgcaactttttaaaacttag 30570333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 32968560 - 32968477
Alignment:
Q  15 atgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    |||||||  ||||||| |||| |||||||||||| | |||||  |||||| |||| |||||||| ||| |||| ||||||||||    
T  32968560 atgcaaaggggctaaaacatagagggccaaaattgtggttttcatacatggggggccaaaatcgcaacgttttgaaagttaggg 32968477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 32973933 - 32974016
Alignment:
Q  15 atgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    |||||||  ||||||| |||| |||||||||||| | |||||  |||||| |||| |||||||| ||| |||| ||||||||||    
T  32973933 atgcaaaggggctaaaacatagagggccaaaattgtggttttcatacatggggggccaaaatcgcaacgttttgaaagttaggg 32974016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 22220494 - 22220390
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtt--agggtgaaaagtgcaa 110  Q
    |||||||||  ||||||||| ||  ||||||||||| |||||||| |||||  ||||||||||| | || | ||| ||||||  |||| ||||||||||     
T  22220494 agatgcaaatgggctaaatcttagggggccaaaattgtagtttttatacatagggggtcaaaattgcaagtattttaaagttagagggggaaaagtgcac 22220395  T
Q  111 tttag 115  Q
    |||||    
T  22220394 tttag 22220390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 1824073 - 1824121
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtac 61  Q
    |||||||||| ||||||||| ||  ||||||||||| ||||||||||||    
T  1824073 agatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtac 1824121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 1858518 - 1858566
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtac 61  Q
    |||||||||| ||||||||| ||  ||||||||||| ||||||||||||    
T  1858518 agatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtac 1858566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 37728560 - 37728644
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagg 97  Q
    ||||||||| | |||||||| ||||||| ||||||| ||||||||||||||  | || |||||| | ||||||||||||||||||    
T  37728560 agatgcaaagaagctaaatcttaaagggtcaaaattgtagtttttgtacataggaggccaaaattgcaactttttaaaagttagg 37728644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 3927770 - 3927668
Alignment:
Q  15 atgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtt--agggtgaaaagtgcaatt 112  Q
    |||||||  ||||||| |||| ||| |||||||| |||||||  |||||| |||| |||||||| ||| |||||||||||  |||| |||||||||| ||    
T  3927770 atgcaaatgggctaaaacatagaggaccaaaattgtagttttcatacatggggggccaaaatcgcaacattttaaaagttagagggggaaaagtgcactt 3927671  T
Q  113 tag 115  Q
    |||    
T  3927670 tag 3927668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 50909667 - 50909772
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggc-caaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtg--aaaagtgca 109  Q
    |||||||||  ||||||||| ||| |||  ||||||| |||||||| |||||  || |||||||||| |||||||||||| ||||||||  |||||||||    
T  50909667 agatgcaaaggggctaaatcttaagggggtcaaaattgtagtttttatacatagggagtcaaaatcgcaactttttaaaacttagggtggaaaaagtgca 50909766  T
Q  110 atttag 115  Q
     |||||    
T  50909767 ctttag 50909772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 10448255 - 10448340
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    |||||||||  ||||| ||| || |||||||||||| ||||||||||||||  ||||  ||||||| |||||||| ||| ||||||    
T  10448255 agatgcaaaggggctatatcttagagggccaaaattgtagtttttgtacatagggggctaaaatcgcaactttttgaaacttaggg 10448340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 1834200 - 1834121
Alignment:
Q  38 gggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtt--agggtgaaaagtgcaatttag 115  Q
    ||||||||||| |||||||| |||||  ||||||||||| |||| ||||| ||||||  |||| |||||||||| |||||    
T  1834200 gggccaaaattgtagtttttatacatagggggtcaaaattgtaagttttttaaagttagagggggaaaagtgcactttag 1834121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 1964464 - 1964540
Alignment:
Q  41 ccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtt-agggt-gaaaagtgcaatttag 115  Q
    |||||||| |||||||||| |||  |||| |||||| ||||||||||||||||| ||||| |||||||||| |||||    
T  1964464 ccaaaattgtagtttttgttcatagggggccaaaattgtaactttttaaaagttaagggtggaaaagtgcactttag 1964540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 31600991 - 31601063
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttag 96  Q
    ||||||||| ||| ||| ||||||| |||||||||||| |  ||||||||||| | || ||||||||||||||    
T  31600991 ggctaaatcttaaggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttag 31601063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 33310087 - 33310131
Alignment:
Q  16 tgcaaaaaggctaaatcataaagggccaaaattctagtttttgta 60  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||    
T  33310087 tgcaaagaggctaaatcatagagggccaaaattatagtttttgta 33310131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 31599884 - 31599810
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    ||||||||| ||  || |||||||| |||||||||||| |  ||||||||||| | || ||||||||||||||||    
T  31599884 ggctaaatcttaggggaccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttaggg 31599810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 26421628 - 26421720
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttag-ggtgaaaagtgcaatttag 115  Q
    ||||||||| ||| ||| ||||||| |||||||||||| |  | ||||||||| | || ||||| |||||||| || |||||||||| |||||    
T  26421628 ggctaaatcttaaggggtcaaaattgtagtttttgtacttaggaggtcaaaattgcaagtttttgaaagttagaggggaaaagtgcactttag 26421720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 6449 - 6375
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaacttttt 87  Q
    |||||||||||||||||||| ||  ||| ||||||| ||||||||||||||  ||||  ||||||||||||||||    
T  6449 agatgcaaaaaggctaaatcttagggggtcaaaattgtagtttttgtacatagggggctaaaatcgtaacttttt 6375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 60196 - 60113
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttag 96  Q
    |||||||||  ||||||||||||  ||| ||||||| |||||||| |||||  ||||||||||| | || ||||||||||||||    
T  60196 agatgcaaaggggctaaatcatagggggtcaaaattgtagtttttatacatagggggtcaaaattgcaagtttttaaaagttag 60113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 61454 - 61502
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtac 61  Q
    |||||||||| ||||||||||||  ||||||||||| ||||||||||||    
T  61454 agatgcaaaagggctaaatcatagggggccaaaattatagtttttgtac 61502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 1829598 - 1829689
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaa 104  Q
    |||||||||  ||||||||| ||  ||||||||||| |||||||| ||| |  ||||||||||| | || |||||||||||||||| |||||    
T  1829598 agatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacttagggggtcaaaattgcaagtttttaaaagttagggggaaaa 1829689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 3333051 - 3333125
Alignment:
Q  43 aaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttag--ggtgaaaagtgcaatttag 115  Q
    |||||| ||||||||||||||  |||| |||||||| |||||||| ||| ||||  || ||||||||||||||||    
T  3333051 aaaattgtagtttttgtacatagggggccaaaatcgcaactttttcaaacttagaaggggaaaagtgcaatttag 3333125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 16704495 - 16704574
Alignment:
Q  16 tgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta 95  Q
    |||||| |||||||||| ||||||  ||||||| |||||||||||| |  ||||||||||| | || ||||| |||||||    
T  16704495 tgcaaagaggctaaatcttaaaggatcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagtta 16704574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 30494635 - 30494569
Alignment:
Q  40 gccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagt 106  Q
    ||||||||  |||||||| |||||  || | ||||||||||||||||| |||||||||| |||||||    
T  30494635 gccaaaatcatagtttttatacatagggtgccaaaatcgtaactttttgaaagttagggggaaaagt 30494569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 30495718 - 30495795
Alignment:
Q  38 gggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgcaatttag 115  Q
    ||||||||||| |  |||||||||||  ||| | ||||||| |||||||| ||||||||||  ||||||||| |||||    
T  30495718 gggccaaaattgttatttttgtacataggggattaaaatcgcaactttttgaaagttaggggaaaaagtgcactttag 30495795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 16415581 - 16415632
Alignment:
Q  66 ggggtcaaaatcgtaactttttaaaagtta--gggtgaaaagtgcaatttag 115  Q
    ||||||||||||| |||||||||||| |||  |||||||||||||| |||||    
T  16415581 ggggtcaaaatcgcaactttttaaaatttaaggggtgaaaagtgcactttag 16415632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 46721245 - 46721300
Alignment:
Q  43 aaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    |||||| ||||||||||||||  ||||| ||||||| |||||||||||||||||||    
T  46721245 aaaattgtagtttttgtacatagggggttaaaatcgcaactttttaaaagttaggg 46721300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 46720045 - 46719965
Alignment:
Q  15 atgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta 95  Q
    |||||||  ||||||||| || ||| | |||||| |||||||| |||||  |||| |||||||| ||||||||||||||||    
T  46720045 atgcaaatgggctaaatcttagaggactaaaattgtagtttttatacatagggggccaaaatcgcaactttttaaaagtta 46719965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 51038813 - 51038889
Alignment:
Q  41 ccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtt-agggt-gaaaagtgcaatttag 115  Q
    |||||||| |||||||||| |||  ||||||||||| | ||||||||||||||| ||||| |||||||||| |||||    
T  51038813 ccaaaattgtagtttttgttcatagggggtcaaaattgcaactttttaaaagttaagggtggaaaagtgcactttag 51038889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 534605 - 534542
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaat 76  Q
    ||||||||| |||||||||| ||  ||||||||||| ||||||||||||||  | |||||||||    
T  534605 agatgcaaataggctaaatcttagggggccaaaattgtagtttttgtacataggaggtcaaaat 534542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 12700268 - 12700177
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgcaatttag 115  Q
    ||||||||||||  ||| ||||||| |||||||||||| |  |||| |||||| | || ||||| |||||||||| | |||||||| |||||    
T  12700268 ggctaaatcatagggggtcaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaagtgcactttag 12700177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 18442726 - 18442652
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    ||||||| ||||  ||||||||||| |||||||  |||||| |||| |||||||| ||| |||| ||||||||||    
T  18442726 ggctaaaacatagggggccaaaattgtagttttcatacatggggggccaaaatcgcaacgttttgaaagttaggg 18442652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 19487800 - 19487726
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    ||||||| ||||  ||||||||||| |||||||  |||||| |||| |||||||| ||| |||| ||||||||||    
T  19487800 ggctaaaacatagggggccaaaattgtagttttcatacatggggggccaaaatcgcaacgttttgaaagttaggg 19487726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 28263117 - 28263191
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    ||||||| ||||  ||||||||||| | |||||  |||||| |||| |||||||| ||| |||||||||||||||    
T  28263117 ggctaaaacatagggggccaaaattgtggttttcatacatggggggccaaaatcgcaacgttttaaaagttaggg 28263191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 54540796 - 54540889
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta--gggtgaaaagtgcaatttag 115  Q
    ||||||||| ||  ||||||||||| |||||||||||| |  ||||||||||| | || ||||| |||||||  ||| |||||||||| |||||    
T  54540796 ggctaaatcttagggggccaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttag 54540889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 19984955 - 19984870
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    |||||||||  || |||||| ||||||| ||||||| ||||||||||||||  |||| |||||| | || ||||| ||| ||||||    
T  19984955 agatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggccaaaattgcaagtttttgaaacttaggg 19984870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 53901408 - 53901485
Alignment:
Q  38 gggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgcaatttag 115  Q
    ||||||| ||| |||||||||||| |  || |||||||| | |||||||| ||| |||||| |||||||||| |||||    
T  53901408 gggccaacattgtagtttttgtacttaaggagtcaaaattgcaacttttttaaacttagggggaaaagtgcactttag 53901485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 22776832 - 22776892
Alignment:
Q  38 gggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    ||||||||||| ||||||||||||||  |||| |||||| | |||||| | ||||||||||    
T  22776832 gggccaaaattgtagtttttgtacatagggggccaaaattgcaactttctgaaagttaggg 22776892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 28262287 - 28262195
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta-gggtgaaaagtgcaatttag 115  Q
    ||||||| ||||  ||||||||||| | |||||  |||||| |||| |||||||| ||| |||| ||||||| ||| |||||||||| |||||    
T  28262287 ggctaaaacatagggggccaaaattgtggttttcatacatggggggccaaaatcgcaacgttttgaaagttaggggggaaaagtgcactttag 28262195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 49216341 - 49216269
Alignment:
Q  25 gctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagg 97  Q
    |||||||| ||| ||| || |||| ||||||||||||||  ||||||||||| | |||||||| ||| |||||    
T  49216341 gctaaatcttaaggggacataattgtagtttttgtacatagggggtcaaaattgcaactttttgaaacttagg 49216269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 18300720 - 18300821
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgcaatt 112  Q
    |||||||||  |||||||| |||  ||| ||||||| |||||||||||| |  ||||||||||| | || ||| | |||||||||| |||||||||||||    
T  18300720 agatgcaaaggggctaaattatag-gggtcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttatgaaagttagggggaaaagtgcaatt 18300818  T
Q  113 tag 115  Q
    |||    
T  18300819 tag 18300821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 22587949 - 22587999
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacat 63  Q
    |||||||||  ||||||||| ||| ||||||||||| ||||||||||||||    
T  22587949 agatgcaaaggggctaaatcttaaggggccaaaattgtagtttttgtacat 22587999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 22587606 - 22587522
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    ||||||||| |||||||||| ||  ||||||||||| ||||||||||| ||  |||  |||||| | |||||||| ||||||||||    
T  22587606 agatgcaaagaggctaaatcttagggggccaaaattgtagtttttgta-ataggggaccaaaattggaactttttgaaagttaggg 22587522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 11996783 - 11996739
Alignment:
Q  43 aaaattctagtttttgtacatgtggggtcaaaatcgtaacttttt 87  Q
    |||||| ||||||||||||||  ||||||||||||| ||||||||    
T  11996783 aaaattgtagtttttgtacatagggggtcaaaatcgcaacttttt 11996739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 18299479 - 18299435
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagttttt 57  Q
    |||||||||| ||||||||||||  ||||||||||| ||||||||    
T  18299479 agatgcaaaagggctaaatcatagggggccaaaattgtagttttt 18299435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 28365565 - 28365514
Alignment:
Q  66 ggggtcaaaatcgtaactttttaaaagtta--gggtgaaaagtgcaatttag 115  Q
    ||||||||||||| |||||||||||| |||  |||||||||||||| |||||    
T  28365565 ggggtcaaaatcgcaactttttaaaatttaaggggtgaaaagtgcattttag 28365514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 32739704 - 32739644
Alignment:
Q  38 gggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    ||||||||||| ||||||||||||||  |||| |||||| | || ||||| ||||||||||    
T  32739704 gggccaaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaagttaggg 32739644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 42195238 - 42195137
Alignment:
Q  13 agatgcaaaaaggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaagtgcaatt 112  Q
    |||||||||  ||||||||| ||  || |||||||| ||| ||||||||||  |||| |||||||| |||||||||||  | |||| |||||||||| ||    
T  42195238 agatgcaaaggggctaaatcttaggggaccaaaattgtagattttgtacatagggggccaaaatcgcaactttttaaagttaagggggaaaagtgcactt 42195139  T
Q  113 ta 114  Q
    ||    
T  42195138 ta 42195137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 19753006 - 19752914
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta-gggtgaaaagtgcaatttag 115  Q
    ||||||||||||  ||||||||||| |||||||||||| |  |||| |||||| | || ||||| ||||||| ||| |||||||||| |||||    
T  19753006 ggctaaatcatagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttag 19752914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 36486511 - 36486568
Alignment:
Q  41 ccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    |||||||| |||||||||||| |  ||||||||||| | || ||||||||||||||||    
T  36486511 ccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttaggg 36486568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 38834162 - 38834102
Alignment:
Q  43 aaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttagggtgaaaa 104  Q
    |||||| ||||||||||||||  ||| ||||||||| |||||||||||||||| || |||||    
T  38834162 aaaattgtagtttttgtacataaggg-tcaaaatcgcaactttttaaaagttaaggggaaaa 38834102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 36485381 - 36485321
Alignment:
Q  38 gggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttaggg 98  Q
    ||||||||||| |||||||||||| |  | ||||||||| |||| ||||| ||||||||||    
T  36485381 gggccaaaattatagtttttgtacttaagaggtcaaaattgtaagttttttaaagttaggg 36485321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 3314 - 3406
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta-gggtgaaaagtgcaatttag 115  Q
    ||||||||| ||  || |||||||| |||||||||||| | |||||||||||| |||| ||||| ||||| | ||| |||||||||| |||||    
T  3314 ggctaaatcttaggggaccaaaattatagtttttgtacctatggggtcaaaattgtaagtttttgaaagtaaggggggaaaagtgcactttag 3406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 7421 - 7493
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagttag 96  Q
    ||||||||| ||  ||| ||||||| |||||| |||||||  |||||||||||||||||||||| ||| ||||    
T  7421 ggctaaatcttagggggtcaaaattgtagtttctgtacatagggggtcaaaatcgtaactttttcaaacttag 7493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 998 - 1055
Alignment:
Q  38 gggccaaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta 95  Q
    ||||||||||| ||||||||||||||  |||  |||||| | ||||||||||||||||    
T  998 gggccaaaattatagtttttgtacataagggaccaaaattgcaactttttaaaagtta 1055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 18805 - 18752
Alignment:
Q  42 caaaattctagtttttgtacatgtggggtcaaaatcgtaactttttaaaagtta 95  Q
    ||||||| |||||||||| |||  | ||||||||||| ||||||||||||||||    
T  18805 caaaattgtagtttttgttcataggaggtcaaaatcgcaactttttaaaagtta 18752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 37242 - 37150
Alignment:
Q  24 ggctaaatcataaagggccaaaattctagtttttgtacatgtggggtcaaaatcg-taactttttaaaagttagggtgaaaagtgcaatttag 115  Q
    ||||||||| ||  ||||||||||| | |||||||||| |  ||||||||||| |  || |||||||||| ||||| |||||||||| |||||    
T  37242 ggctaaatcgtagggggccaaaattgttgtttttgtacttagggggtcaaaattgcaaattttttaaaagatagggggaaaagtgcactttag 37150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University