View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14463_low_5 (Length: 401)
Name: NF14463_low_5
Description: NF14463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14463_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 1052199 - 1052350
Alignment:
| Q |
18 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttaattttatcaaatgagcaattaata-acatatttttctaatttttcaagt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
1052199 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttaattttatctaatgagcaattaattgacatatttttctaatttttcaagt |
1052298 |
T |
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| Q |
117 |
attacttttaggtgggaatgaaatttttgttagagatgatacttattttata |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1052299 |
attacttttaggtgggaatgaaatttttgttagagatgatacttattttata |
1052350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 270 - 382
Target Start/End: Original strand, 1052870 - 1052982
Alignment:
| Q |
270 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1052870 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacaaacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac |
1052969 |
T |
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| Q |
370 |
cgaggaggttaag |
382 |
Q |
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|||||||| |||| |
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| T |
1052970 |
cgaggaggctaag |
1052982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 382
Target Start/End: Original strand, 1046210 - 1046322
Alignment:
| Q |
270 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac |
369 |
Q |
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|||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| || |||| |||||||||||| || |
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| T |
1046210 |
gtttatcaaccaaatggacaagcaccaatatcttctacagacaaactactcacaccacgaattggaggcaatggtattgaaatatcacaattcacaccac |
1046309 |
T |
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| Q |
370 |
cgaggaggttaag |
382 |
Q |
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| T |
1046310 |
caaggaggctaag |
1046322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 1032876 - 1032926
Alignment:
| Q |
18 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1032876 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta |
1032926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 1045975 - 1046130
Alignment:
| Q |
27 |
atttggcatgttggaagagtttctaattctagtatgtatttaattttatcaaatgagcaattaa-taacatatttttctaatttttcaagtattactttt |
125 |
Q |
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||||||| |||||| || |||||||||||| ||||| ||||| ||| ||||||| ||||||||| ||||| |||||| | ||||||| |||||| |||| |
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| T |
1045975 |
atttggcttgttggtagggtttctaattctggtatgcatttagtttaatcaaattagcaattaactaacaaattttt-tgatttttc-agtatt-ttttt |
1046071 |
T |
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| Q |
126 |
aggtgggaatgaaatttttgttagag-atgatacttattttatattcactagtttaatta |
184 |
Q |
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| T |
1046072 |
aggtaggaattgaatttttgttacagaatgata-ttgatttatgttcactagtttaatta |
1046130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 1043275 - 1043321
Alignment:
| Q |
9 |
ggtagattattctgtcagatttggcatgttggaagagtttctaattc |
55 |
Q |
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| T |
1043275 |
ggtatatttttctgtcagatttggcatgttggaagagtttcaaattc |
1043321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 1071009 - 1071071
Alignment:
| Q |
270 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaatt |
332 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||| |||||||| | ||| | |||||||||| |
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| T |
1071009 |
gtttatcagccaaatgggcaagcaccaatatcttctacagacaagccactaaaaccacaaatt |
1071071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 1049579 - 1049625
Alignment:
| Q |
9 |
ggtagattattctgtcagatttggcatgttggaagagtttctaattc |
55 |
Q |
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|||| ||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
1049579 |
ggtatatttttctgtcaaatttggcatgttggaagagtttcaaattc |
1049625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 1065046 - 1065080
Alignment:
| Q |
21 |
tgtcagatttggcatgttggaagagtttctaattc |
55 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
1065046 |
tgtcagatttggcatgttggaagagtttctgattc |
1065080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1058007 - 1058052
Alignment:
| Q |
18 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgt |
63 |
Q |
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||||||||||||||||| ||||||||||||||| || || |||||| |
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| T |
1058007 |
ttctgtcagatttggcacgttggaagagtttctgatactggtatgt |
1058052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 1065270 - 1065347
Alignment:
| Q |
270 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggtttt |
347 |
Q |
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|||| ||| |||||||| || ||||||||||| || |||||||| |||||||||||||||| || || |||||||| |
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| T |
1065270 |
gtttttcagccaaatggacaggcaccaatatcatctacagacaagtcactcacaccacaaattcgaagtaatggtttt |
1065347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1070347 - 1070392
Alignment:
| Q |
18 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgt |
63 |
Q |
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|||||||| |||||||||||||||||||||||| || || |||||| |
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| T |
1070347 |
ttctgtcaaatttggcatgttggaagagtttctgatactggtatgt |
1070392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 1050993 - 1051077
Alignment:
| Q |
281 |
aaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcaca |
365 |
Q |
| |
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|||||| |||| ||||| |||||| || ||| ||||| |||||||||||||||||||||| | || |||| ||||||||||| |
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| T |
1050993 |
aaatggacaagaaccaacatcttctgcaagcaagctacttacaccacaaattggaggtgatgctgttgaaatatcacaattcaca |
1051077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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