View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14463_low_9 (Length: 256)
Name: NF14463_low_9
Description: NF14463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14463_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 3753452 - 3753232
Alignment:
| Q |
17 |
cagagacagggtaacaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatac |
116 |
Q |
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| T |
3753452 |
cagagacagggtaacaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggaaaatggattggatac |
3753353 |
T |
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| Q |
117 |
aatctcagaaccatcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcg |
216 |
Q |
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| T |
3753352 |
aatctcagaaccatcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcg |
3753253 |
T |
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| Q |
217 |
tcgaaagaagacaaagaaact |
237 |
Q |
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| T |
3753252 |
tcgaaagaagacaaagaaact |
3753232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 4046786 - 4046981
Alignment:
| Q |
17 |
cagagacagggtaacaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatac |
116 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||| || ||||||| ||||||| |||| |
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| T |
4046786 |
cagagatagggtaacaagagctaaatttatcaagaattttctcaccattggaatcaggaacaaccgcgatacgaataataccggaaaatggaccggattt |
4046885 |
T |
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| Q |
117 |
aatctcagaaccatcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgttttt |
212 |
Q |
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| T |
4046886 |
aacctcggaaccatcatggttgaagttgattggtgaagaagtgtatatgatccatgtctgattgttattgagttgaagggtatatttggttttttt |
4046981 |
T |
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