View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_12 (Length: 422)
Name: NF14464_high_12
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 35926149 - 35926547
Alignment:
| Q |
19 |
tgattaccaccaaaattcccaattactctaaacctgtttactcactattttgaactatgttggtgtcaagaacaagaatgtgcagatttttctacgccac |
118 |
Q |
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| T |
35926149 |
tgattaccaccaaaattcccaattaccctaaacctgtttactcactattttgtactatgttggtgtcaagaacaagaatgtgcagattcttctacgccac |
35926248 |
T |
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| Q |
119 |
ccctccaatctgattcatccacatgacccctcccttcgaccgtttgacacatcaacccagatttttgttgtcgtgtaacctctctttgt------aacaa |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |
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| T |
35926249 |
ccctccgatctgattcatccacatgacccctcccttcgaccgtttgacacatcaacccagatttttgttgtcgtttgacctctctttgtagtcacaacaa |
35926348 |
T |
|
| Q |
213 |
gaaagtcatgaaaagctaccccctttgatatatttgttgtcactgaattctggnnnnnnnnnaaggtttaaaaacattggattttgattatatttgttga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35926349 |
gaaagtcatgaaaagctaccccctttgatatatttgttgtcactgaattctggtttttttttaaggtttaaaaacattggattttgattatatttgttga |
35926448 |
T |
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| Q |
313 |
aattgatacaaaagttataaaattgattctagttgttgatgaatttctggggtggatgcttctcaacccaaagatctgtggtatacatagatatccttt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35926449 |
aattgatacaaaagttataaaattgattctagttgttgatgaatttctggggtggatgcttctcaacccaaagatctgtggtatacatagatatccttt |
35926547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 99 - 380
Target Start/End: Complemental strand, 38664316 - 38664027
Alignment:
| Q |
99 |
tgcagatttttctacgccacccctccaatctgattcatccacatgacccctcccttcgaccgtttgacacatcaacccagatttttgttgtcgtgtaacc |
198 |
Q |
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| T |
38664316 |
tgcagattcttctatgccacccctccgatctgattcatccatgtgacccctccatccgaccatgtgagacatcaacccatattgttgttgtcgtgtgacc |
38664217 |
T |
|
| Q |
199 |
tctctttgtaa------caagaaagtcatgaaaagctaccccct-ttgatatatttgttgtcactgaattctggnnnnnnnnna-aggtttaaaaacatt |
290 |
Q |
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|||||||||| || |||| |||| ||||| |||||||| |||||||||||| ||| |||||| | | ||||||||||| ||| |
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| T |
38664216 |
tctctttgtagtcgtagcacgaaattcatcaaaagataccccctcttgatatatttgctgtagttgaatttggtattttttttacaggtttaaaaaaatt |
38664117 |
T |
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| Q |
291 |
ggattttgattatatttgttgaaattgatacaaaagttataaaattgattctagttgttgatgaatttctggggtggatgcttctcaacc |
380 |
Q |
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| T |
38664116 |
ggattttgattatatttgttgaaattgatacaaaagttataaaattggttctagttgttgatgaatttttggggtgggtgcttctcaacc |
38664027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 38664404 - 38664336
Alignment:
| Q |
30 |
aaaattcccaattact-ctaaacctgtttactcactattttgaactatgttggtgtcaagaacaagaat |
97 |
Q |
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||||||||||| ||| |||||||||||| |||||||||| | | |||||||||||||||||||||||| |
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| T |
38664404 |
aaaattcccaagtaccactaaacctgtttcctcactatttcgtaatatgttggtgtcaagaacaagaat |
38664336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 17690344 - 17690300
Alignment:
| Q |
288 |
attggattttgattatatttgttgaaattgatacaaaagttataaa |
333 |
Q |
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| T |
17690344 |
attgggttttgattagatttgttgaaattgat-caaaagttataaa |
17690300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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