View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_16 (Length: 365)
Name: NF14464_high_16
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 31727458 - 31727119
Alignment:
| Q |
10 |
catcatcatctggagttagaaatctattgccttgactaaaaatagttggggacgaacttccactgattgcatattgtcgccaatgtgtgtaatcattgtt |
109 |
Q |
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| T |
31727458 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttcgggacgaacttccaccgattgcatattgttgccaatgtgtgtaatcattgtt |
31727359 |
T |
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| Q |
110 |
caccacatgaaagtatccgaacctgcatcagcaacatttgtgtagaaaaaatttcaaactgttaggaataagagtaaaaatatataacaaatggcaagta |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727358 |
caccacatgaaagtatccgaacctgcatctgcaacattcgtgtagaaaaaatttcaaactgttaggaataagagtaaaaatatataacaaatggcaagta |
31727259 |
T |
|
| Q |
210 |
gggcttaattattgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttg |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727258 |
gggcttaattactgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttg |
31727159 |
T |
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| Q |
310 |
catatttttgtcctcttcataggaatcaatatgaccaaag |
349 |
Q |
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| T |
31727158 |
catatttttgtcctcttcataggaatcactatgaccaaag |
31727119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 39082835 - 39082482
Alignment:
| Q |
10 |
catcatcatctggagttagaaatctattgccttgactaaaaatagttggggacgaacttccactgattgcatattgtcgccaatgtgtgtaatcattgtt |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
39082835 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttggggacgaacttccaccaattgcatattgttgccaatgtgtataatcattgtt |
39082736 |
T |
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| Q |
110 |
caccacatgaaagtatccgaacctgcatcagcaacatttgtgtagaaaaaatttcaaactgttaggaataa--------------gagtaaaaatatata |
195 |
Q |
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| T |
39082735 |
gaccacatgaaagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcaaaataaagagtaaaaatatata |
39082636 |
T |
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| Q |
196 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082635 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaatttacaaaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
39082536 |
T |
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| Q |
296 |
gctatagtagcttgcatatttttgtcctcttcataggaatcaatatgaccaaag |
349 |
Q |
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| T |
39082535 |
gctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaag |
39082482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 39076255 - 39076217
Alignment:
| Q |
89 |
ccaatgtgtgtaatcattgttcaccacatgaaagtatcc |
127 |
Q |
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| T |
39076255 |
ccaatgtgtgtagtcattgttcaccacatgaaaatatcc |
39076217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 7592262 - 7592294
Alignment:
| Q |
89 |
ccaatgtgtgtaatcattgttcaccacatgaaa |
121 |
Q |
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| T |
7592262 |
ccaatgtgtgtaatcattgttcaccacatgaaa |
7592294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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