View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_17 (Length: 364)
Name: NF14464_high_17
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 41854771 - 41854440
Alignment:
| Q |
19 |
ttctgctccaccaattccacatcttcaaaatcccaatccgcttccattgttaacgatcttctcgattacctcaacgaatcttggactcatttccacgcca |
118 |
Q |
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| T |
41854771 |
ttctgctccaccaattccacatcttcaaaatcccaatccgcttccattgttaacgatcttctcgattaccttaacgaatcttggactcatttccacgcca |
41854672 |
T |
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| Q |
119 |
caggtacagtaccttcattccattcttatttattattcttccattttgcctaaactaaccttttttcatttcgtgtgtagctgaagctaaaagacaattg |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
41854671 |
caggtacagtaccttcattccattcttatt----attcttccattttgcctaaactaaccttttt-catttcgtgtgtagctgaagctaaacgacaattg |
41854577 |
T |
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| Q |
219 |
atcgcagctggttttcatcttcttaatgagaatgaagaatggaatctcaaaccaggtggacgctacttcttcactcgtaatatgtcctgtttggttgctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41854576 |
atcgcagctggttttcatcttcttaatgagaatgaagaatggaatctcaaaccaggtggacgctacttcttcactcgtaatatgtcctgtttggttgctt |
41854477 |
T |
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| Q |
319 |
tcgcagttggacaaaagtgagtttcaattagtataat |
355 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
41854476 |
tcgcagttggacaaaagtgagtttcaattaatataat |
41854440 |
T |
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