View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_20 (Length: 343)
Name: NF14464_high_20
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 31036958 - 31037022
Alignment:
| Q |
16 |
gagacaaagttggattatgtgacattaaggattggtcaagtttcttaaagcttgtgtggtgcctt |
80 |
Q |
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| T |
31036958 |
gagacaaagttggattatttgacattaaggtttggtcaagtttcttaaagcttgtgtggtacctt |
31037022 |
T |
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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 31037093 - 31037151
Alignment:
| Q |
256 |
attcctttttgaacattctcactcagctctattttcttccttcttaaagataactatac |
314 |
Q |
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| T |
31037093 |
attcctttttgaacattctctctcagctctattttcttccttcttaaagataacaatac |
31037151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 31074219 - 31074289
Alignment:
| Q |
109 |
aacattagacaaccgaagtatttcgagcactagtattgaaattgaatcaagtttcttttgagcatacatca |
179 |
Q |
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| T |
31074219 |
aacattagagaatcgaattattttgagcattggtattgaaattaaattaagtttcttttgagcacacatca |
31074289 |
T |
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