View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_21 (Length: 333)
Name: NF14464_high_21
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 2349761 - 2350074
Alignment:
| Q |
1 |
tgaaagtagtcgagcatgtgaccccaaaaatgagaacaataagaggattcacaattctatctaaaactcatgagctggtggtgatagctagaataaagga |
100 |
Q |
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| T |
2349761 |
tgaaagtagtcgagcatgtgaccccaaaaatgagaacaataagaggattcacaattctatctaaaactcatgagctggtggtgatagctagaataaagga |
2349860 |
T |
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| Q |
101 |
aaatcccttatgcatgggaatgaatgtgtaatattattattcttgaccagcaagataaccattcacaataaataaatctttatttcaaactctgtgttgc |
200 |
Q |
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| T |
2349861 |
aaatcccttatgcatgggaatgaatgtgtaatattattattcttggccagcaagataaccattcacaataaataaatctttatttcaaactctgtgttgc |
2349960 |
T |
|
| Q |
201 |
acaacacaaaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccacca |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2349961 |
acaacacaaaatttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccacca |
2350060 |
T |
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| Q |
301 |
ccaacaaaaccacc |
314 |
Q |
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|||||||||||||| |
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| T |
2350061 |
ccaacaaaaccacc |
2350074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 211 - 314
Target Start/End: Original strand, 2329671 - 2329774
Alignment:
| Q |
211 |
acttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaac |
310 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | || ||| | |||||||||| ||||| |
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| T |
2329671 |
acttttacgtaatggaaacatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagccaccctttcatccatttccaccaccaagaaaac |
2329770 |
T |
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| Q |
311 |
cacc |
314 |
Q |
| |
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|||| |
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| T |
2329771 |
cacc |
2329774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 302
Target Start/End: Original strand, 2325965 - 2326059
Alignment:
| Q |
208 |
aaaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccacc |
302 |
Q |
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||||||||||||| ||||||||||||||||| | || || |||| ||||||||||||||| ||| |||||| |||||||| |||| |||||| |
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| T |
2325965 |
aaaacttttacgtgatggaaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccacc |
2326059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 2302411 - 2302474
Alignment:
| Q |
209 |
aaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatc |
272 |
Q |
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| T |
2302411 |
aaacttttacacaatggaaacatggttcattgtcctcattactctctgcatcatcttcctcatc |
2302474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 2292805 - 2292871
Alignment:
| Q |
222 |
atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcct |
288 |
Q |
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|||||| |||||||||||| || ||| |||| |||||||||||||| |||||||||||| |||||| |
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| T |
2292805 |
atggaaccatggttcattgtcctcgttactctttgcatcatcttccttatcagagccatcctctcct |
2292871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 2309139 - 2309215
Alignment:
| Q |
225 |
gaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccac |
301 |
Q |
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|||||||||||||| | || ||| ||||||||||||||||||| ||||||||||| |||||| | |||| ||||| |
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| T |
2309139 |
gaaacatggttcatagtcctcgttactctctgcatcatcttccttatcagagccatgctctccttcttcacaaccac |
2309215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 2320125 - 2320205
Alignment:
| Q |
222 |
atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccacc |
302 |
Q |
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||||||||||||||||| | || ||| | || |||||||||||||| |||||||||||| |||||| | |||| |||||| |
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| T |
2320125 |
atggaaacatggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcctctccttcttcacaaccacc |
2320205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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