View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14464_high_26 (Length: 290)
Name: NF14464_high_26
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 52011081 - 52011336
Alignment:
| Q |
19 |
gtctgtgcgtacagtcagccacatcagtggccatttgatcaagatcgaacaattcaaattttaaactatttaaaacttaacatacaagaaacaccaaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52011081 |
gtctgtgcgtacagtcagccacatcggtggccatttgatcaagatcgaacaattcaaattttaaactatttaaaacttaacatacaagaaacaccaaatg |
52011180 |
T |
|
| Q |
119 |
ctatatgaaacaagtaaagttagtgtacatacctctaaaatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaat |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52011181 |
ctatatgaaacaagt-----tagtgtacatacctctaatatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaat |
52011275 |
T |
|
| Q |
219 |
ctttaagccgaatatgagtaggaaacccacttagaagtagttcaagaaagcgacaattcat |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52011276 |
ctttaagccgaatatgagtaggaaacccactcagaagtagttcaagaaagcgacaattcat |
52011336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 279
Target Start/End: Complemental strand, 51988296 - 51988162
Alignment:
| Q |
145 |
acatacctctaaaatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatctttaagccgaatatgagtaggaaac |
244 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||| | | | |||| |
|
|
| T |
51988296 |
acatacctctaatatggaagtgtccaatgttccaaaatattttataaattcttcctctgtcaaccagaagcaatctttaagccgaatcacatttgaaaac |
51988197 |
T |
|
| Q |
245 |
ccacttagaagtagttcaagaaagcgacaattcat |
279 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
51988196 |
ccactaagaagtagttcaagaaagtgaccattcat |
51988162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 52001337 - 52001457
Alignment:
| Q |
145 |
acatacctctaaaatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatctttaagccgaatatgagtaggaaac |
244 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||| |||| || |||||||||||||||| ||| |||||||||||||||||||| | | ||||| |
|
|
| T |
52001337 |
acatacctctaatatggaattgtccaactttccaaaatattttgtaaattcttcctctgtcatccaagagcaatctttaagccgaatcacatttggaaat |
52001436 |
T |
|
| Q |
245 |
ccacttagaagtagttcaaga |
265 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
52001437 |
ccacttagaagtagttcaaga |
52001457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 145 - 271
Target Start/End: Original strand, 11749011 - 11749137
Alignment:
| Q |
145 |
acatacctctaaaatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatctttaagccgaatatgagtaggaaac |
244 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||| |||||||||| || |||||||||| || |
|
|
| T |
11749011 |
acatacctctaccgtggaagtgtccaacactccaaaatatgcagtgaattcttcctatgtcaaccaggagcagtctttaagccaaacatgagtaggagac |
11749110 |
T |
|
| Q |
245 |
ccacttagaagtagttcaagaaagcga |
271 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
11749111 |
ccacttagaagtacttcaagaaagcga |
11749137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University