View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_27 (Length: 286)
Name: NF14464_high_27
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_27 |
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| [»] scaffold0692 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 12892332 - 12892598
Alignment:
| Q |
1 |
cctcagcgcatggcacacgaattaaaaaatgcagttaatttcgtatgagaatgagaaactataacttagtttacaaagttacccttcattaatgctatgg |
100 |
Q |
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| T |
12892332 |
cctcagcgcatggcacacgaattaaaaaatgcagttaatttcgtatgagaatgagaaattataacttagtttacaaagttacccttcattaatgctatgg |
12892431 |
T |
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| Q |
101 |
gaa-gacaagtccaattatgtaacttcacatagcatcttaagcatttaggaaagtctgtagtaggcatgatttgtaaatctttgctccccaaacactaga |
199 |
Q |
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| T |
12892432 |
gaaagataagtccaattatgtaacttcaca--gcatcttcagcatttaggaaagtctgtagtaggcatgatttgtaaatctttgctccccaaatactaga |
12892529 |
T |
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| Q |
200 |
tagtggttttcttaatcgtacattctttagttaaactattgaaatttggaattcttcaaggatcgtggt |
268 |
Q |
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| T |
12892530 |
tagtggttttcttaatcgtacattctttagttaaactattgatattttgaattctttgaggatcgtggt |
12892598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 6633 - 6901
Alignment:
| Q |
1 |
cctcagcgcatggcacacgaattaaaaaatgcagttaatttcgtatgagaatgagaaactataacttagtttacaaagttacccttcattaatgctatgg |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6633 |
cctcagcgcatggcacacaaattaaaaaatgcagttaatttcgtatgagaatgagaaattataacttagtttacaaagttacccttcattaatggtatgg |
6732 |
T |
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| Q |
101 |
gaa-gacaagtccaattatgtaacttcacatagcatcttaagcatttaggaaagtctgtagtaggcatgatttgtaaatctttgctccccaaacactaga |
199 |
Q |
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| T |
6733 |
gaaagataaaaccaattacgtaacttcacatagcatcttaagcatttagggaagtctgtagtaggcatgatttgtaaatctttgctccccaaatactaga |
6832 |
T |
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| Q |
200 |
tagtggttttcttaatcgtacattctttagttaaactattgaaatttggaattcttcaaggatcgtggt |
268 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6833 |
tagtggttttcttaattgtacattctttagttaaactattgaaatttggaattcttcgaggatcgtggt |
6901 |
T |
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