View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_28 (Length: 278)
Name: NF14464_high_28
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 31041334 - 31041590
Alignment:
| Q |
5 |
ttatactaaccttttcgatgcaatggttgattcaatttatgcagcattggaaaaaatagatgcaaaaaatgtttctctaatcattggagaaactggttgg |
104 |
Q |
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| T |
31041334 |
ttatactaaccttttcgatgcaatggttgattcaatttatgcagcattggaaaaaatagatgcaaaaaatgtttctctaattattggagaaactggttgg |
31041433 |
T |
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| Q |
105 |
cctgctgcagggaatgacccttacgcaagtaaggaaaatgctaagacatataacacaaacttgattcaacatttgcagagtggtaaaggcacaccaagaa |
204 |
Q |
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| T |
31041434 |
cctgctgcagggaatgacccttacacaagtaaagaaaatgctaagacatataacacaaacttgattcaacatttgcagagtggtaaaggcacaccaagaa |
31041533 |
T |
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| Q |
205 |
gaccaaaccaagctataaatgcgtttatatttgcgatgttcgatgaggaccagaagg |
261 |
Q |
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| T |
31041534 |
gaccaaaccaagctatagatgcgtttatatttgcgatgttcgatgaggaccagaagg |
31041590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 31045982 - 31046239
Alignment:
| Q |
5 |
ttatactaaccttttcgatgcaatggttgattcaatttatgcagcattggaaaaaatagatgcaaaaaatgtttctctaatcattggagaaactggttgg |
104 |
Q |
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| T |
31045982 |
ttatactaaacttttcgatgcaatggttgattcaatttacgcagcattggaaaaaatagatgcaaaagatgtttctctaatcattggagaaactggttgg |
31046081 |
T |
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| Q |
105 |
cctgctgcagggaatgacccttacgcaagtaaggaaaatgctaagacatataacacaaacttgattc-aacatttgcagagtggtaaaggcacaccaaga |
203 |
Q |
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| T |
31046082 |
cctgctgcagggaatgacccttacacaagtaaggaaaatgccaagacatataacacaaacttgattcaaacatttgcagagtggtaaaggcacaccaaga |
31046181 |
T |
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| Q |
204 |
agaccaaaccaagctataaatgcgtttatatttgcgatgttcgatgaggaccagaagg |
261 |
Q |
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| T |
31046182 |
agaccaaaccaagctataaatgtgttaatatttgcgatgttcgatgaggaccagaagg |
31046239 |
T |
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