View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_31 (Length: 252)
Name: NF14464_high_31
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 29876135 - 29875904
Alignment:
| Q |
1 |
taatgggaggttcaaaagtgtgagacatagagttttggcaaatgggatcaatccaaggctctcaatgatttactttggtggaccacctttgagtgagaaa |
100 |
Q |
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| T |
29876135 |
taatgggaggttcaaaagtgtgagacatagagttttggcaaatggtatcaatccaaggctctcaatgatttactttggtggaccacctttgagtgagaaa |
29876036 |
T |
|
| Q |
101 |
atagcaccattgccttcactcatgaaaggaaatgaaagcttgtacaaagaatttacatggtttgagtacaagaattctacttatggaacaagattggctg |
200 |
Q |
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| T |
29876035 |
atagcaccattgccttcactcatgaaaggaaatgaaagcttgtacaaagaatttacatggtttgagtacaagaattctacttatggaacaagattggctg |
29875936 |
T |
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| Q |
201 |
acaataggttgggaaattatgaaaggattgct |
232 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
29875935 |
acaataggctgggaaattatgaaaggattgct |
29875904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 21572884 - 21573084
Alignment:
| Q |
11 |
ttcaaaagtgtgagacatagagttttggcaaatgggatcaatccaaggctctcaatgatttactttggtggaccacctttgagtgagaaaatagcaccat |
110 |
Q |
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| T |
21572884 |
ttcaagagtgtgaggcacagagttttagcaaatgggttcaaatctagactctccatgatttattttggtggtccatctttgaatgagaaaattgcacctt |
21572983 |
T |
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| Q |
111 |
tgccttcactcatgaaaggaaatgaaagc---ttgtacaaagaatttacatggtttgagtacaagaattctacttatggaacaagattggctgacaatag |
207 |
Q |
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| T |
21572984 |
tgccttgtctcataaaaggaaatgaatgcttattatatagagagtttacatggtttgaatacaagaaatcagcttatgctacaagattatcagacaatag |
21573083 |
T |
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| Q |
208 |
g |
208 |
Q |
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| T |
21573084 |
g |
21573084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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