View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_34 (Length: 250)
Name: NF14464_high_34
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 24505414 - 24505182
Alignment:
| Q |
3 |
atatccaatgttgcattcgggagaggctgagtaatggtatctctgataaaactattttcaccacctatatgccatactgcattatgaagaggctgaataa |
102 |
Q |
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| T |
24505414 |
atatccaatgttgcattagggagaggctgagtaatggtatctctgataaaactattttcaccacctacatgccatactgcattatgaagaggctgaataa |
24505315 |
T |
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| Q |
103 |
tggtatctctggtaaaattattttcaccgcctagattcaaaattgcattagggagtggctgagtatctctagtcaatctattttcatcatctatatgcaa |
202 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24505314 |
tggtatctctggtaaaattattttcaccacctagattcaaaattgcattagggagtggctgagtatctctagtcaatctattttcatcatctatatgcaa |
24505215 |
T |
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| Q |
203 |
tgctgcgtaaggcagaggctgagaaatagtatc |
235 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
24505214 |
tgctgcgtaaggcagaggctgataaatagtatc |
24505182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 24505480 - 24505348
Alignment:
| Q |
3 |
atatccaatgttgcattcgggagaggctgagtaatggtatctctgataaaactattttcaccacctatatgccatactgcattatgaagaggctgaataa |
102 |
Q |
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|||| |||||||||||| ||||||||| ||||| ||||||||| ||||| ||||||||||||| |||| | || ||||||| | ||||||||| ||| |
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| T |
24505480 |
atatgcaatgttgcattttggagaggctcggtaatagtatctctggtaaaattattttcaccaccgatatccaatgttgcattagggagaggctgagtaa |
24505381 |
T |
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| Q |
103 |
tggtatctctggtaaaattattttcaccgccta |
135 |
Q |
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| T |
24505380 |
tggtatctctgataaaactattttcaccaccta |
24505348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 24505500 - 24505382
Alignment:
| Q |
49 |
taaaactattttcaccacctatatgccatactgcattatgaagaggctgaataatggtatctctggtaaaattattttcaccgcctagattcaaaattgc |
148 |
Q |
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||||| |||||||||||||||||||| || |||||| || ||||||| |||| |||||||||||||||||||||||||| || | || ||| |||| |
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| T |
24505500 |
taaaattattttcaccacctatatgcaatgttgcattttggagaggctcggtaatagtatctctggtaaaattattttcaccaccgatatccaatgttgc |
24505401 |
T |
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| Q |
149 |
attagggagtggctgagta |
167 |
Q |
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||||||||| ||||||||| |
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| T |
24505400 |
attagggagaggctgagta |
24505382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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