View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_38 (Length: 238)
Name: NF14464_high_38
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_38 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 35662203 - 35661983
Alignment:
| Q |
17 |
agttacactgcataaaaagactatggcgcatcaagctagagtgaaaggcaaaacaaggggttctaacannnnnnnnaaagctggtaataagttgaaatta |
116 |
Q |
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| T |
35662203 |
agttacaccgcataaaaagactatggcgcaacaagctagagcgaaaggcaaaacaaggggttctaacattttttttaaagctggtattaagttgaaatta |
35662104 |
T |
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| Q |
117 |
aagggtgtatatcacttgaaaacttaattgaagatgaagtgaatccccatagatatattcttcaccaaatgaagatcatgcaaaaacaagatatttatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
35662103 |
aagggtgtatatcacttgaaaacttaattgaagatgaagtgaatccccatagatatattcttcaccaaatgaagat-atacaaaaacaagatatttatat |
35662005 |
T |
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| Q |
217 |
tgcttgatcatggctttcttct |
238 |
Q |
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||||||||||| |||||||||| |
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| T |
35662004 |
tgcttgatcatagctttcttct |
35661983 |
T |
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