View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_4 (Length: 489)
Name: NF14464_high_4
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 136 - 485
Target Start/End: Complemental strand, 49630829 - 49630480
Alignment:
| Q |
136 |
ttttacatgctttgcttgaagagtaggaacacaatgtatatctgataggccatactgcatccaggataatcaaattcatcactgtcttggttcctcattc |
235 |
Q |
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| T |
49630829 |
ttttacatgcattgcaaaaagtgtaggaacacaatgtatacctgataggccatactgcatccaggataatcaaattcatcactgtcttggttcctcattc |
49630730 |
T |
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| Q |
236 |
tctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggatcgtaaaatccttcaaccaaaccatctggagcaaatgc |
335 |
Q |
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| T |
49630729 |
tctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggattgtaaaatccttcaaccaaaccatctggagcaaatgc |
49630630 |
T |
|
| Q |
336 |
cattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccgtgatctgcattttgtcatctacaaaagagtccttaaaccaa |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49630629 |
cattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccatgatctgcattttgtcatctacaaaagagtccttaaaccaa |
49630530 |
T |
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| Q |
436 |
tcatgcaaaggggtgttcgccattacatatatcgaatgatgatgtccatc |
485 |
Q |
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| T |
49630529 |
tcatgcaaaggggtgtttgccattacatatatcgaatgacgatgtccatc |
49630480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 226 - 446
Target Start/End: Original strand, 31651745 - 31651965
Alignment:
| Q |
226 |
ttcctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggatcgtaaaatccttcaaccaaaccatctg |
325 |
Q |
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| T |
31651745 |
ttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataagcatcagggtcataaaacccttcaatcaaaccatcag |
31651844 |
T |
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| Q |
326 |
gagcaaatgccattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccgtgatctgcattttgtcatctacaaaagagtc |
425 |
Q |
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||||||| |||||||||||||| | || |||||||||||||||||| ||||| || || ||||| ||| || | |||||| |||||| | ||||| || |
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| T |
31651845 |
gagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatgatagctattaaccaaaatgtccattttatcatcttccaaagaatc |
31651944 |
T |
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| Q |
426 |
cttaaaccaatcatgcaaagg |
446 |
Q |
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| T |
31651945 |
cttaaaccaatgatgcaaagg |
31651965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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