View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14464_high_40 (Length: 234)
Name: NF14464_high_40
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 23315499 - 23315323
Alignment:
| Q |
44 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccaccggtcaccgccaccaaaatccaaaccggtttcatctcctacctccgatgccgctt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23315499 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccatcggtcaccgccaccaaaatccaaaccggtttcatctcctacctccgatgccgctt |
23315400 |
T |
|
| Q |
144 |
ctctctttctgtcaacacgaccacaccatcatcctcctcaccaccgctttcgacctccaaccatcccagccaccact |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23315399 |
ctctctttctgtcaacacgaccacaccatcatcctcctcaccaccgctttcgacctccaaccatcccagccaccact |
23315323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 39208450 - 39208590
Alignment:
| Q |
62 |
tcttcaatcccttccacaagccgccaccggtcaccgccaccaaaatccaaaccggtttcatctcctacctccgatgccgcttctctctttctgtcaacac |
161 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39208450 |
tcttcaatcccttccacgagccaccaccgg----cgccaccaaaacccaattcggtttcatctcctacctccggcgccgcttctctctttctgtcaacac |
39208545 |
T |
|
| Q |
162 |
gaccacaccatcatcctcctcaccaccgctttcgacctccaacca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39208546 |
gaccacaccatcatcctcctcaccaccgctttcgacctccaacca |
39208590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 50446601 - 50446461
Alignment:
| Q |
62 |
tcttcaatcccttccacaagccgccaccggtcaccgccaccaaaatccaaaccggtttcatctcctacctccgatgccgcttctctctttctgtcaacac |
161 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50446601 |
tcttcaatcccttccacgagccaccaccgg----cgccaccaaaacccaattcggtttcatctcctacctccggcgccgcttctctctttctgtcaacac |
50446506 |
T |
|
| Q |
162 |
gaccacaccatcatcctcctcaccaccgctttcgacctccaacca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50446505 |
gaccacaccatcatcctcctcaccaccgctttcgacctccaacca |
50446461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 17713099 - 17712950
Alignment:
| Q |
44 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccaccggtcaccgccaccaaaatccaaaccggtttcatctcctacctccgatgccgctt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17713099 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccaccggtcaccgccaccaaaattcaaaccggtttcatctcctaccttcgatgccgctt |
17713000 |
T |
|
| Q |
144 |
ctctctttctgtcaacacgaccacaccatcatcctcctcaccaccgcttt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17712999 |
ctctctttctgtcaacacgaccacaccatcatcctcctcaccaccgcttt |
17712950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 19014328 - 19014179
Alignment:
| Q |
44 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccaccggtcaccgccaccaaaatccaaaccggtttcatctcctacctccgatgccgctt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19014328 |
cacttgttccgtttctcttcttcaatcccttccacaagccgccaccggtcaccgccaccaaaattcaaaccggtttcatctcctaccttcgatgccgctt |
19014229 |
T |
|
| Q |
144 |
ctctctttctgtcaacacgaccacaccatcatcctcctcaccaccgcttt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19014228 |
ctctctttctgtcaacacgaccacaccatcatcctcctcaccaccgcttt |
19014179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University