View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_5 (Length: 487)
Name: NF14464_high_5
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 38787672 - 38787259
Alignment:
| Q |
13 |
cagagtcagcaacctaactaatgtgtagctgcatacataggcactactactaactaacggctaagaaattatttaggatatagaaaagcagcatccctcg |
112 |
Q |
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| T |
38787672 |
cagagtcagcaacctaactaatgtgtagctgcatacataggcactactactaactaacggctaagaaattatttaggatatagaaaagcagcatccctcg |
38787573 |
T |
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| Q |
113 |
gacacctaaggtgcataagtatctgcactatggtttattgttggaaaaatgagtgaagacatttctcactgtcaccttagaagctaattaaccatgatat |
212 |
Q |
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| T |
38787572 |
gacacctaaggtgcataagtatctgcactatggtttattgttggaaaaatgagtgaaaacatttctcgctgtcaccttagaagctaattaacgatgatat |
38787473 |
T |
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| Q |
213 |
acacattacagaccattatggtaactgtagttttgcagccatagggttctactgttcacattaagtggattattgaaattcaacaaaatgaatggatnnn |
312 |
Q |
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| T |
38787472 |
acacattacagaccatcatggcaactatagttttgcagccatagggttctactgttcacattaagtggattattgaaattcaacaaaatgaatggataaa |
38787373 |
T |
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| Q |
313 |
nnnnntcatgatgtaccggagtcaatgacgatccactttccatcctcttgcccttgcacactaggcagcatcattcgctcaactcctatctgcttctgct |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38787372 |
aaaaatcatgatgtaccggagtcaatgacgatccactttccatcctcttgcccttgcacactaggcagcatcattcgctcaactcctatctgcttctgct |
38787273 |
T |
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| Q |
413 |
tagcctggtcacac |
426 |
Q |
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| T |
38787272 |
tagcctggtcacac |
38787259 |
T |
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