View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_6 (Length: 485)
Name: NF14464_high_6
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 44554157 - 44554617
Alignment:
| Q |
18 |
aatagatctgtagaaatgttaggaaaagatggaagagggttggtggaagtagggtttgttgttgatggttggaaaatagttgaaggattggatgggattg |
117 |
Q |
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| T |
44554157 |
aatagatctgtagaaatgttaggaaaagatggaagagggttggtggaagtagggtttgttgttgatggttggaaaatagttgaaggattggatgggattg |
44554256 |
T |
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| Q |
118 |
taggattcatattcataattggttgggtagttgcaatattgttttgaggcatggaaattgatggaacagttgcatgagggatacttagagtggtgttaac |
217 |
Q |
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| T |
44554257 |
taggattcatattcataattggttgggtagttgcaatattgttttgaggcatggaaattgatggaacagttgcatgagggatacttagagtggtgttaac |
44554356 |
T |
|
| Q |
218 |
cacttgtgacattgttgcttctgttattggtagtgaaactgttgcagttgtaacaacttgtgaaggtgttggtgccgaaatttgtggtggttttgatatg |
317 |
Q |
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| T |
44554357 |
cacttgtgacattgttgattctgttattggtagtgaaactgttgcagttgtaacaacttgtgacggtgttggtgccgaaatttgtggtggttttgatatg |
44554456 |
T |
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| Q |
318 |
ttttgaggtgaagggttggtatgaaaatgatcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttgg |
417 |
Q |
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| T |
44554457 |
ttttgaggtgaagggttggtatgaaaatgatcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttgg |
44554556 |
T |
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| Q |
418 |
ttctcttgtgatacttataaacattctcaaacttctctttgcatttctttgaacttctgtg |
478 |
Q |
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| T |
44554557 |
ttctcttgtgatacttataaacattctcaaacttctctttgcatttctttgaacttctgtg |
44554617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 478
Target Start/End: Complemental strand, 44532836 - 44532706
Alignment:
| Q |
348 |
tcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaa |
447 |
Q |
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||||| |||| ||||||||||||||||| ||| || || || |||||||| |||| || ||| ||||||||||| ||||||||||| || ||||| |||| |
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| T |
44532836 |
tcaagtgcttgtaattgatcaaaaaatctataggtttttccttctgatttcccacttctaccttctttggttcttttgtgatacttgtatacattttcaa |
44532737 |
T |
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| Q |
448 |
acttctctttgcatttctttgaacttctgtg |
478 |
Q |
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| T |
44532736 |
atttctccttgcacttctttgagcttctgtg |
44532706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 348 - 463
Target Start/End: Complemental strand, 12682190 - 12682075
Alignment:
| Q |
348 |
tcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaa |
447 |
Q |
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|||||||||| |||||||||||| |||| |||||| |||||||||||||| ||||||| || |||||||||||||||||||| || ||||||||||||| |
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| T |
12682190 |
tcaagggcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctcttccttctttggttctcttgtgatatttgtaaacattctcaa |
12682091 |
T |
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| Q |
448 |
acttctctttgcattt |
463 |
Q |
| |
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|||| ||||||||||| |
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| T |
12682090 |
acttttctttgcattt |
12682075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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