View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14464_high_7 (Length: 474)

Name: NF14464_high_7
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14464_high_7
NF14464_high_7
[»] chr1 (11 HSPs)
chr1 (17-460)||(14624611-14625057)
chr1 (14-105)||(8259476-8259567)
chr1 (17-110)||(48379469-48379561)
chr1 (17-103)||(15342868-15342953)
chr1 (40-98)||(43728649-43728707)
chr1 (17-105)||(20381232-20381320)
chr1 (14-79)||(24120365-24120430)
chr1 (30-102)||(47024310-47024382)
chr1 (14-105)||(29700952-29701043)
chr1 (55-105)||(51776545-51776595)
chr1 (35-103)||(9694104-9694171)
[»] chr6 (8 HSPs)
chr6 (14-105)||(32183775-32183866)
chr6 (14-105)||(15135046-15135138)
chr6 (14-101)||(21208156-21208243)
chr6 (16-105)||(20969772-20969861)
chr6 (14-105)||(15489377-15489467)
chr6 (17-96)||(22746982-22747060)
chr6 (30-105)||(521163-521238)
chr6 (30-105)||(6837993-6838068)
[»] chr4 (18 HSPs)
chr4 (13-105)||(16529830-16529922)
chr4 (15-105)||(3534042-3534133)
chr4 (14-105)||(36755112-36755203)
chr4 (14-105)||(12832430-12832521)
chr4 (17-95)||(45549175-45549253)
chr4 (14-105)||(38476271-38476362)
chr4 (32-105)||(15024709-15024782)
chr4 (14-103)||(56192216-56192305)
chr4 (30-105)||(29845135-29845210)
chr4 (19-105)||(13205684-13205770)
chr4 (34-104)||(55693110-55693180)
chr4 (30-105)||(37996905-37996980)
chr4 (14-105)||(46433226-46433316)
chr4 (70-103)||(23126030-23126063)
chr4 (70-103)||(43407344-43407377)
chr4 (70-103)||(48085410-48085443)
chr4 (72-104)||(25197499-25197531)
chr4 (32-104)||(28992674-28992745)
[»] scaffold1940 (1 HSPs)
scaffold1940 (14-105)||(549-640)
[»] scaffold0001 (1 HSPs)
scaffold0001 (14-105)||(428285-428375)
[»] chr5 (7 HSPs)
chr5 (14-110)||(19279424-19279520)
chr5 (13-105)||(23418861-23418953)
chr5 (30-105)||(9622400-9622475)
chr5 (17-96)||(35377941-35378023)
chr5 (17-95)||(27903561-27903638)
chr5 (16-105)||(43100950-43101038)
chr5 (14-102)||(16561746-16561834)
[»] chr2 (7 HSPs)
chr2 (14-110)||(9032710-9032806)
chr2 (13-105)||(19494732-19494824)
chr2 (17-105)||(840296-840382)
chr2 (43-105)||(6190211-6190273)
chr2 (14-102)||(7315366-7315456)
chr2 (70-103)||(32406864-32406897)
chr2 (14-110)||(25322804-25322900)
[»] chr8 (6 HSPs)
chr8 (16-105)||(8845557-8845646)
chr8 (14-105)||(7186186-7186277)
chr8 (13-105)||(41407196-41407288)
chr8 (14-105)||(6148439-6148529)
chr8 (14-99)||(37127669-37127754)
chr8 (17-105)||(20765617-20765705)
[»] chr3 (8 HSPs)
chr3 (17-102)||(26952549-26952634)
chr3 (17-105)||(18090364-18090452)
chr3 (25-102)||(37333177-37333254)
chr3 (61-105)||(10046254-10046298)
chr3 (13-99)||(47342335-47342421)
chr3 (17-99)||(47865032-47865113)
chr3 (30-103)||(26919378-26919451)
chr3 (30-103)||(46909979-46910052)
[»] chr7 (11 HSPs)
chr7 (16-102)||(16706678-16706763)
chr7 (16-102)||(17680914-17680999)
chr7 (13-102)||(35015896-35015985)
chr7 (35-105)||(12287080-12287150)
chr7 (13-98)||(1706567-1706652)
chr7 (33-102)||(35016074-35016143)
chr7 (12-78)||(965259-965325)
chr7 (17-105)||(26576138-26576226)
chr7 (14-49)||(33037271-33037306)
chr7 (12-105)||(1910965-1911057)
chr7 (60-105)||(41853370-41853415)
[»] scaffold0355 (1 HSPs)
scaffold0355 (17-105)||(2769-2857)
[»] scaffold0069 (1 HSPs)
scaffold0069 (17-105)||(61021-61109)
[»] scaffold0281 (1 HSPs)
scaffold0281 (39-105)||(22269-22334)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Complemental strand, 14625057 - 14624611
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggtattagggagaa 116  Q
    |||||||||||| ||||||||||||||||||| |  | |||||||||||||| |||||||||| |||||||||||||||||| |||||| ||||||||||    
T  14625057 tccatagccacccatatattattctccacaataggagtgcctctttaatgtggtgctaaataggtgaagcacccaccattgtagatggtcttagggagaa 14624958  T
Q  117 agtctatttttaatttgttcttttt-acaatggccaaaatcataaataaccctttaaagaatggtt-agtcatcaacccagaagcccgcaaatcggttct 214  Q
    || |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  14624957 agcctatttttaatttgtttttttttacaatggccaaaatcataaataacccttgaaagaatggtttagtcatcaacccagaagcccgcaaatcggttct 14624858  T
Q  215 agtatgtaactttccaatgtgtactttcgaacaaaaatatagttttgtcttgcctttcagagatttttgaaaatgtggggggtgggcaaagttgtttcca 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14624857 agtatgtaactttccaatgtgtactttcgaacaaaaatatagttttgtcttgcctttcagagatttttgaaaatgtggagggtgggcaaagttgtttcca 14624758  T
Q  315 aaagaaactgagatagccaaatcactgcgcaaacataaaaattgaatataaaatggggagaaaatgcctcctgttatgta-atgatatgccaaacgaaac 413  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  14624757 aaagaaactgagatagccaaatcactgcccaaacataaaaattgaatataaaatggggagaaaatgcctcctattatgtacgtgatatgccaaacgaaac 14624658  T
Q  414 gaacacataatatccttctataactataccaaaatttgtctctacag 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14624657 gaacacataatatccttctataactataccaaaatttgtctctacag 14624611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 8259476 - 8259567
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||||||||| ||||||||| | ||||||||| || |||| |||||| ||||||||||||| |||||||||||||||||| ||||||    
T  8259476 ttctccatagccacccatatattataccccacaatgggggtgcctatttaatatgatgctaaatagatgaagcacccaccattgtagatggt 8259567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 48379561 - 48379469
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggtattag 110  Q
    |||||||||||| || |||||| ||| ||||||| || |||| ||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  48379561 tccatagccacccatgtattatactctacaatgg-ggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggatggttttag 48379469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 15342868 - 15342953
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatg 103  Q
    |||||||||||| || |||||| ||||||||||| || || | ||||||||| |||||||||| |||||||||||||||||| ||||    
T  15342868 tccatagccacccatgtattatactccacaatgg-ggtgcttatttaatgtggtgctaaataggtgaagcacccaccattgtagatg 15342953  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 43728649 - 43728707
Alignment:
Q  40 ctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgt 98  Q
    |||||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||||    
T  43728649 ctccacaatggaggtgcctatttaatgtggtgctaaatagatgaagcatccaccattgt 43728707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 20381232 - 20381320
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||||| || |||||| |||||||||||  | |||| |||||| || |||||||||| |||| || |||||||||||| ||||    
T  20381232 tccatagccacccatgtattatactccacaatgggagtgcctatttaatatggtgctaaataggtgaaacatccaccattgtggttggt 20381320  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 24120365 - 24120430
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatag 79  Q
    |||||||||||| || ||| ||||||||||||||||| ||  ||| ||||||||| ||||||||||    
T  24120365 ttctccatagccgcccatacattattctccacaatgggggttcctatttaatgtggtgctaaatag 24120430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 47024382 - 47024310
Alignment:
Q  30 atatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggat 102  Q
    ||||||| | |||||||||||||| |||| ||||||||| ||  |||||| | | ||||||||||||||||||    
T  47024382 atatattttactccacaatggaggtgcctatttaatgtggtgtgaaatagattacgcacccaccattgtggat 47024310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 29701043 - 29700952
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||  |||| ||||||| | ||||||| ||| || |||| |||||| |  |||||||||| | |||||||||||||| ||||||||    
T  29701043 ttctccatatacacccatatattttgctccacagtgggggtgcctatttaatattgtgctaaataggttaagcacccaccattctggatggt 29700952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 51776595 - 51776545
Alignment:
Q  55 gcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||| ||||||||| |||||||||| |||| ||||||||||| ||||||||    
T  51776595 gcctatttaatgtggtgctaaataggtgaaacacccaccattatggatggt 51776545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 9694104 - 9694171
Alignment:
Q  35 ttattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatg 103  Q
    |||| ||||||||||| || |||| |||| | || |||||||||| |||||||||||||||| ||||||    
T  9694104 ttatactccacaatgg-ggtgcctatttagtatggtgctaaataggtgaagcacccaccattttggatg 9694171  T

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Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 32183866 - 32183775
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||||||||| ||||||||| ||||||||||| || |||| |||||| ||||||||||||| |||||||||||||||||||||||||    
T  32183866 ttctccatagccacccatatattatactccacaatgggggtgcctatttaatatgatgctaaatagatgaagcacccaccattgtggatggt 32183775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 15135046 - 15135138
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatgga-ggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||||||||| || |||||| |||||||||||| || |||| ||||||||| |||||||||| ||||| |||| ||||||| ||||||    
T  15135046 ttctccatagccacccatgtattatactccacaatggagggtgcctatttaatgtggtgctaaataggtgaagtaccctccattgttgatggt 15135138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 21208243 - 21208156
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtgga 101  Q
    ||||||||||||||| |||||||||||||||||||   || |||| ||||||  | || ||||||| |||||||| ||||||||||||    
T  21208243 ttctccatagccacccatatattattctccacaataagggtgcctatttaatacggtgttaaataggtgaagcacacaccattgtgga 21208156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 20969772 - 20969861
Alignment:
Q  16 ctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||  |||| |||| |||| || |||||||| || ||||  |||||||| |||||||||| ||||| |||||||||||||||||||    
T  20969772 ctccataaacacccatatgttatacttcacaatgggggtgcctacttaatgtggtgctaaataggtgaagtacccaccattgtggatggt 20969861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 15489467 - 15489377
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||| |||| | ||||||| ||||||||||| || |||| ||||||||| |||||||||| |||| ||| |  |||||||||||||    
T  15489467 ttctccatagacacccaaatattatactccacaatgggggtgcctatttaatgtggtgctaaataggtgaaacactc-tcattgtggatggt 15489377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 22747060 - 22746982
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccatt 96  Q
    |||||||||||||||||||||| ||||||||  || | |||| |||||| |  |||||||||| ||||||||||||||||    
T  22747060 tccatagccaccgatatattatactccacaacaga-gtgcctatttaatatagtgctaaatagatgaagcacccaccatt 22746982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 521238 - 521163
Alignment:
Q  30 atatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||| | |||||||||||||  || | ||||||||| |||||||||| | |||||  ||||||||||||||||    
T  521238 atatattttactccacaatggagatgcttatttaatgtggtgctaaataggttaagcatgcaccattgtggatggt 521163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 6837993 - 6838068
Alignment:
Q  30 atatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||| |||| ||| ||||| | || |||| |||||| ||||||||||||| |||||||||||| ||||||| ||||    
T  6837993 atatgttatactctacaatagtggtgcctatttaatatgatgctaaataggtgaagcacccacgattgtgggtggt 6838068  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 16529922 - 16529830
Alignment:
Q  13 attctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||||||||| || |||||| ||||||||||| || |||| ||||||||| |||||||||| |||||||||||||||||||||||||    
T  16529922 attctccatagccacccatgtattatactccacaatgggggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggatggt 16529830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 3534042 - 3534133
Alignment:
Q  15 tctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagca-cccaccattgtggatggt 105  Q
    |||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||| |||||| |||||||||||    
T  3534042 tctccatagccacccatatattattctccacaatgggggtgcctatttaatgtgatgctaaataggtgaagcaccccaccgttgtggatggt 3534133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 36755203 - 36755112
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||||||||| ||||||||| |||||||||||||| | || |||||| || |||||||||| |||||||||||||||||||||||||    
T  36755203 ttctccatagccacccatatattatactccacaatggaggtgtctatttaatatggtgctaaatagatgaagcacccaccattgtggatggt 36755112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 12832430 - 12832521
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||| |||||||||| || |||||| ||||||||| | || |||  ||||||||| |||||||||| |||||||||||||||||| ||||||    
T  12832430 ttcttcatagccacccatgtattatactccacaataggggtgccgatttaatgtggtgctaaataggtgaagcacccaccattgtagatggt 12832521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 45549175 - 45549253
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccat 95  Q
    ||||||| |||| ||||||||||||| |||||||||| | || ||||||||| |||||||||| |||| ||||||||||    
T  45549175 tccatagacacccatatattattctctacaatggaggtgtctatttaatgtggtgctaaataggtgaaacacccaccat 45549253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 38476271 - 38476362
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||| ||||| ||||||||| || || ||||| || | || ||||||||| |||||||||| |||||||||||||||| | ||||||    
T  38476271 ttctccataaccacccatatattatacttcataatgggggtgtctatttaatgtggtgctaaataggtgaagcacccaccattatagatggt 38476362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 15024709 - 15024782
Alignment:
Q  32 atattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||| ||||| |||||||| |||| |||||| ||||||||||||| ||||||| |||| ||| ||||||||    
T  15024709 atattatactccataatggaggtgcctatttaatatgatgctaaataggtgaagcatccactattatggatggt 15024782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 56192305 - 56192216
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatg 103  Q
    ||||| |||| |||| ||||||| | |||||||| || || |||| ||||||||| || ||||||| | |||||||||||||||||||||    
T  56192305 ttctctatagacacccatatattttactccacaacgggggtgcctatttaatgtggtgttaaataggtaaagcacccaccattgtggatg 56192216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 29845135 - 29845210
Alignment:
Q  30 atatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||||||||||| || ||  ||| ||||||||| || ||||||| || || |||||||||||||||||||    
T  29845135 atatattattctccacaacgggggtacctatttaatgtggtgttaaataggtggaggacccaccattgtggatggt 29845210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 13205684 - 13205770
Alignment:
Q  19 catagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||| |||| ||||||| | || ||||||||||  | || ||||||||| | |||||||| | |||||||||||||||||||||||    
T  13205684 catagacacccatatattttacttcacaatggagatgtctatttaatgtggtactaaataggttaagcacccaccattgtggatggt 13205770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 55693110 - 55693180
Alignment:
Q  34 attattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatgg 104  Q
    ||||| |||||||||| ||  |||| ||||||||| |||||||||| ||||||| ||| ||||||||||||    
T  55693110 attatactccacaatgaagatgcctatttaatgtggtgctaaatagatgaagcatccatcattgtggatgg 55693180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 37996980 - 37996905
Alignment:
Q  30 atatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||| ||||||||||  |  | || ||||||||| ||||||||||  |||||| |||||||||||||||||    
T  37996980 atatattatactccacaatgaggatgtctatttaatgtggtgctaaatagaagaagcatccaccattgtggatggt 37996905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 46433226 - 46433316
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||| |||| ||||||  | ||||||||||| ||  ||| ||||| ||| |||||||||| | ||||||||| |||||||||||||    
T  46433226 ttctccataggcacccatatatattgctccacaatgg-ggtacctatttaaagtggtgctaaataggttaagcacccatcattgtggatggt 46433316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 23126030 - 23126063
Alignment:
Q  70 tgctaaatagttgaagcacccaccattgtggatg 103  Q
    |||||||||| |||||||||||||||||||||||    
T  23126030 tgctaaatagatgaagcacccaccattgtggatg 23126063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 43407344 - 43407377
Alignment:
Q  70 tgctaaatagttgaagcacccaccattgtggatg 103  Q
    |||||||||| |||||||||||||||||||||||    
T  43407344 tgctaaataggtgaagcacccaccattgtggatg 43407377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 48085443 - 48085410
Alignment:
Q  70 tgctaaatagttgaagcacccaccattgtggatg 103  Q
    |||||||||| |||||||||||||||||||||||    
T  48085443 tgctaaataggtgaagcacccaccattgtggatg 48085410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 25197499 - 25197531
Alignment:
Q  72 ctaaatagttgaagcacccaccattgtggatgg 104  Q
    |||||||| ||||||||||||||||||||||||    
T  25197499 ctaaataggtgaagcacccaccattgtggatgg 25197531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 28992674 - 28992745
Alignment:
Q  32 atattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatgg 104  Q
    ||||||| ||||||||||| || | || |||| | || |||||||||| |||||||||||| |||||||||||    
T  28992674 atattatactccacaatgg-ggtgtctatttagtatggtgctaaataggtgaagcacccacaattgtggatgg 28992745  T

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Target: scaffold1940 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 640 - 549
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||||||||| ||||||||||||||||||||| || |||| ||||||||| || ||||||| |||||||  ||||||||||||||||    
T  640 ttctccatagccacccatatattattctccacaatgggggtgcctatttaatgtggtgttaaataggtgaagcattcaccattgtggatggt 549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 428375 - 428285
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||||||||| || |||||| ||||||||||| || |||| |||||| || |||||||||| |||||||||||||||||||||||||    
T  428375 ttctccatagccacccatgtattatactccacaatgg-ggtgcctatttaatctggtgctaaataggtgaagcacccaccattgtggatggt 428285  T

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Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 19279520 - 19279424
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggtattag 110  Q
    ||||||||||||||| || |||||| ||||| || ||  | | || |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  19279520 ttctccatagccacccatgtattatactccataaagggtgtgtctatttaatgtgatgctaaataggtgaagcacccaccattgtggatggtcttag 19279424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 23418953 - 23418861
Alignment:
Q  13 attctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||||||||| ||||||||| ||||||||||| || |||| ||||||  | || ||||||| ||||||||||| |||||||||||||    
T  23418953 attctccatagccacccatatattatactccacaatgggggtgcctatttaatacggtgttaaatagatgaagcacccatcattgtggatggt 23418861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 9622400 - 9622475
Alignment:
Q  30 atatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||| |||| ||||||||||| || | || ||||||||| |||||||||| |||||||||||||||||||||||||    
T  9622400 atatgttatactccacaatgggggtgtctatttaatgtggtgctaaataggtgaagcacccaccattgtggatggt 9622475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 35377941 - 35378023
Alignment:
Q  17 tccatagccaccgatatattatt---ctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccatt 96  Q
    |||||| ||||| ||||||||||   |||||||| ||||| |||| |||||| ||||| ||||||| ||||||||||||||||    
T  35377941 tccatatccacccatatattattatgctccacaacggaggtgcctatttaatatgatgttaaatagatgaagcacccaccatt 35378023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 27903638 - 27903561
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccat 95  Q
    ||||||| |||| || |||||| ||||||||||| || |||| ||||||||  |||||||||| |||| ||||||||||    
T  27903638 tccatagtcacccatgtattatactccacaatgg-ggtgcctatttaatgtagtgctaaataggtgaaacacccaccat 27903561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 43100950 - 43101038
Alignment:
Q  16 ctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||  |||| |||| |||| ||||||||||  || || | ||||||||| |||||||||| | |||||||||||||| ||||||||    
T  43100950 ctccataagcacccatatgttatactccacaatgagggtgcttatttaatgtggtgctaaataggttaagcacccaccatt-tggatggt 43101038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 16561834 - 16561746
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggat 102  Q
    |||||||||| |||| |||| || | |||||||| |  ||| ||| ||||||||  |||||||||| | |||| |||||||||||||||    
T  16561834 ttctccatagacacctatattttttactccacaacgagggctcctatttaatgtagtgctaaatagattaagctcccaccattgtggat 16561746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 9032710 - 9032806
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggtattag 110  Q
    ||||||||||||||| || |||||| ||||| ||| |||| |||| ||||||||| || ||||||| |||||||||||||||| |||||||| ||||    
T  9032710 ttctccatagccacccatgtattatactccataatagaggtgcctatttaatgtggtgttaaataggtgaagcacccaccattttggatggtcttag 9032806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 19494824 - 19494732
Alignment:
Q  13 attctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||||| |||| ||||||||| ||||||||||| || |||| |||||| || | |||||||| ||||||| ||| |||||||||||||    
T  19494824 attctccatagtcacccatatattatactccacaatgggggtgcctatttaatatggtactaaatagatgaagcatccatcattgtggatggt 19494732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 840296 - 840382
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||||| ||||||||||||  ||||||| || |||| ||||||||| |||||| ||| ||||||||||||||||||| |||||    
T  840296 tccatagccacccatatattattctt-acaatgg-ggtgcctatttaatgtggtgctaagtaggtgaagcacccaccattgtgaatggt 840382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 6190211 - 6190273
Alignment:
Q  43 cacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||| || | || |||||| |||||||||| || |||||||||||||||||||||||||    
T  6190211 cacaatgggggtgtctatttaatatgatgctaaacaggtgaagcacccaccattgtggatggt 6190273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 7315366 - 7315456
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaata-gt-tgaagcacccaccattgtggat 102  Q
    ||||||||||||||| || |||||| ||||||||||  || | || |||||  || ||||||||| || ||||||||||||||||||||||    
T  7315366 ttctccatagccacccatgtattatactccacaatgagggtgtctatttaacatggtgctaaatatgtgtgaagcacccaccattgtggat 7315456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 32406897 - 32406864
Alignment:
Q  70 tgctaaatagttgaagcacccaccattgtggatg 103  Q
    |||||||||| |||||||||||||||||||||||    
T  32406897 tgctaaataggtgaagcacccaccattgtggatg 32406864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 25322900 - 25322804
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggtattag 110  Q
    ||||||||||||| |||| |||||| ||| ||||||  || |||| ||||||||| || ||||||| | || || ||| |||| |||||||| ||||    
T  25322900 ttctccatagccatcgatgtattatactctacaatgagggtgcctatttaatgtggtgttaaataggttaaacatccatcattatggatggtcttag 25322804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 8845646 - 8845557
Alignment:
Q  16 ctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||  |||| |||| |||| |||||||||||| | |||| ||||||||| |||||||||| | |||||||||||||||||||||||    
T  8845646 ctccataagcacccatatgttatactccacaatggaagtgcctatttaatgtggtgctaaataggtaaagcacccaccattgtggatggt 8845557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 7186277 - 7186186
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||||||||| ||||||||||||||||||||   | |||| ||||||  | |||||||||  ||||||||||||||||||| |||||    
T  7186277 ttctccatagccacccatatattattctccacaatgagagtgcctatttaatacggtgctaaatatgtgaagcacccaccattgtgtatggt 7186186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 41407288 - 41407196
Alignment:
Q  13 attctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||| ||||||||| ||||||| | ||||||||||  || |||| |||||| || || ||||||| ||||||||||| |||||||||||||    
T  41407288 attctctatagccacccatatattttactccacaatgatggtgcctatttaatatggtgttaaatagatgaagcacccatcattgtggatggt 41407196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 6148439 - 6148529
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||| |||| ||||||||| || ||||||||||  || | || ||| || || ||||||| |||||||||||||||||||||||||    
T  6148439 ttctccatagacacccatatattatacttcacaatggagatgcttatt-aatatggtgttaaataggtgaagcacccaccattgtggatggt 6148529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 37127669 - 37127754
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtg 99  Q
    ||||||||||||||| || |||||| ||||||| ||  |  |||| ||||||||| || ||||||| | |||||||||||||||||    
T  37127669 ttctccatagccacctatttattatactccacagtgaggatgcctatttaatgtggtgataaataggtaaagcacccaccattgtg 37127754  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 20765705 - 20765617
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||||| || |||||| |||||||||||  | |||| |||||| | ||||||||||| | || ||| || |||||||| ||||    
T  20765705 tccatagccacccatgtattatactccacaatgggagtgcctatttaatataatgctaaataggttaaacactcatcattgtggttggt 20765617  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 26952549 - 26952634
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggat 102  Q
    ||||||| |||| | ||||||| |||||||||||||| | || |||||| || |||||||||| ||||||||||||||||||||||    
T  26952549 tccataggcacccaaatattatactccacaatggaggtgtctatttaatatggtgctaaataggtgaagcacccaccattgtggat 26952634  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 18090452 - 18090364
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||| |||| ||||||||| |   |||||||||| |||| ||||||||| |||||||||| ||||||| |||||||||||||||||    
T  18090452 tccataggcacccatatattatacataacaatggaggtgcctatttaatgtggtgctaaatagatgaagcatccaccattgtggatggt 18090364  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 37333254 - 37333177
Alignment:
Q  25 caccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggat 102  Q
    ||||||||| |||| ||||||||||  |  | || ||||||||| |||||||||| ||||||||||||||||||||||    
T  37333254 caccgatatgttatactccacaatgaggatgtctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 37333177  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 10046298 - 10046254
Alignment:
Q  61 ttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||| || |||||||||||||||| ||||||||||||||||    
T  10046298 ttaatgtggtgttaaatagttgaagcactcaccattgtggatggt 10046254  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 47342421 - 47342335
Alignment:
Q  13 attctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtg 99  Q
    ||||||||||  |||| | ||||||| ||||||||| |||| |||| |||| | || || ||||||| ||||| |||||||||||||    
T  47342421 attctccataagcacccaaatattatactccacaatagaggtgcctgtttagtatgctgttaaataggtgaagtacccaccattgtg 47342335  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 47865032 - 47865113
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtg 99  Q
    |||||||||||  ||||||||| ||||||||| || | |||| |||||| |||||||||||   | |||||||||||||||||    
T  47865032 tccatagccactcatatattatactccacaat-gaagtgcctatttaatatgatgctaaatgaataaagcacccaccattgtg 47865113  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 26919378 - 26919451
Alignment:
Q  30 atatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatg 103  Q
    ||||||||| ||| ||||||| || || | |||||| || |||||||||  ||||||| |||||||||||||||    
T  26919378 atatattatactctacaatgggggtgcttatttaatatggtgctaaatatgtgaagcatccaccattgtggatg 26919451  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 46909979 - 46910052
Alignment:
Q  30 atatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatg 103  Q
    ||||||||| |||||||||||| |  ||| |||||| ||| | |||||||  |||||||||||||| |||||||    
T  46909979 atatattatactccacaatggaagtacctatttaatatgacggtaaataggagaagcacccaccatcgtggatg 46910052  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 16706678 - 16706763
Alignment:
Q  16 ctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggat 102  Q
    |||||||  |||| |||| |||| ||||||||||| || |||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  16706678 ctccataagcacccatatgttatactccacaatgg-ggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 16706763  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 17680914 - 17680999
Alignment:
Q  16 ctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggat 102  Q
    |||||||  |||| |||| |||| ||||||||||| || |||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  17680914 ctccataagcacccatatgttatactccacaatgg-ggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 17680999  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 35015896 - 35015985
Alignment:
Q  13 attctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggat 102  Q
    |||||| ||||||| | ||||||||| ||||||||||  || |||| |||||| || |||||||||| |||| |||||||||||||||||    
T  35015896 attctctatagccatccatatattatactccacaatgagggtgcctatttaatatggtgctaaatagatgaaacacccaccattgtggat 35015985  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 12287150 - 12287080
Alignment:
Q  35 ttattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||| |||||||||||||| |||| ||||||||| || ||||||| | ||||||||||||||| |||||||    
T  12287150 ttatactccacaatggaggtgcctatttaatgtggtgttaaataggtaaagcacccaccattgaggatggt 12287080  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 1706567 - 1706652
Alignment:
Q  13 attctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgt 98  Q
    ||||||| |||||||| || |||||| ||||| ||||| || |||| ||||||||| |||  ||||| ||||||||||||||||||    
T  1706567 attctccgtagccacccatgtattatactccataatgggggtgcctatttaatgtggtgccgaatagatgaagcacccaccattgt 1706652  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 35016074 - 35016143
Alignment:
Q  33 tattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggat 102  Q
    |||||| ||||||||||  || |||| |||||| || |||||||||| ||||||||||||||||||||||    
T  35016074 tattatactccacaatgagggtgcctatttaatatggtgctaaatagatgaagcacccaccattgtggat 35016143  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 965325 - 965259
Alignment:
Q  12 tattctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaata 78  Q
    |||||||||||| |||| ||||||| | ||||||||||| || |||| ||||||||| |||||||||    
T  965325 tattctccatagacacccatatattttactccacaatgggggtgcctatttaatgtggtgctaaata 965259  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 26576138 - 26576226
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||| ||||| || |||||| ||||||||| |||| | ||  ||||| ||||||||||||| |||| |||| ||||| |||||||||    
T  26576138 tccataaccacccatgtattatactccacaatagaggtgtctaattaatatgatgctaaataggtgaaacaccaaccatcgtggatggt 26576226  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 33037306 - 33037271
Alignment:
Q  14 ttctccatagccaccgatatattattctccacaatg 49  Q
    ||||||||||||||| ||||||||||||||||||||    
T  33037306 ttctccatagccacctatatattattctccacaatg 33037271  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 1911057 - 1910965
Alignment:
Q  12 tattctccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||| |||||||| || |||||| || |||||| | || | || |||||| |  |||||||||| |||||||||||||||| ||||||||    
T  1911057 tattctccgtagccacccatgtattatacttcacaatag-ggtgtctatttaatatagtgctaaataggtgaagcacccaccattatggatggt 1910965  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 41853370 - 41853415
Alignment:
Q  60 tttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    ||||||||| |||||||||| ||||||| ||| |||||||||||||    
T  41853370 tttaatgtggtgctaaatagatgaagcatccatcattgtggatggt 41853415  T

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Target: scaffold0355 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 2769 - 2857
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||| ||||||| || |||||| ||||| |||||| | |||| |||||| || |||||||||| |||| ||||||||||||||| ||||    
T  2769 tccagagccacccatgtattatactccataatggaagtgcctatttaatatggtgctaaataggtgaaacacccaccattgtggttggt 2857  T

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Target: scaffold0069 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 61021 - 61109
Alignment:
Q  17 tccatagccaccgatatattattctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||||| || |||||| |||||||||||  | |||| |||||| || |||||||||| |||| || |||||||||||| ||||    
T  61021 tccatagccacccatgtattatactccacaatgggagtgcctatttaatatggtgctaaataggtgaaacatccaccattgtggttggt 61109  T

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Target: scaffold0281 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 22269 - 22334
Alignment:
Q  39 tctccacaatggaggcgcctctttaatgtgatgctaaatagttgaagcacccaccattgtggatggt 105  Q
    |||||||||||| || | || ||||||||| || ||||||| ||||||| |||||||||||||||||    
T  22269 tctccacaatgg-ggtgtctatttaatgtggtgttaaataggtgaagcatccaccattgtggatggt 22334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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