View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_8 (Length: 454)
Name: NF14464_high_8
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 39006189 - 39005893
Alignment:
| Q |
11 |
taattctcattttgttgtgtagccattaatcaaacaatgttgatattctaagtactaataattattccctatctcccttgtacaatacttaaccaactaa |
110 |
Q |
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| T |
39006189 |
taattctcattttgttgtgtagccattaatcaaacaatgttgatattctaagtactaataattattcactatctcccttgtacaatacttaaccaactaa |
39006090 |
T |
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| Q |
111 |
caccactacaacaccaaacaagtccttttttgctgatctaaaaactctgtccttccacttaaagaaacagaaagctaaatgcaataatgttcaagttaaa |
210 |
Q |
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| T |
39006089 |
caccactacaacaccaaacaagtccttttttgcttatctaataactctgtccttccacttaaagaaacagaaagctaaatgcaataatgttcaagttaaa |
39005990 |
T |
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| Q |
211 |
aggagtcacactaaagttggtgtcataggacttgccttattaaatgcttcacttcccctccttttcaattcaaaattcaaatttacacccctcttgc |
307 |
Q |
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| T |
39005989 |
aggagtcacactaaagttggtgccataggacttgccttattaaatgcttcacttcccctccttttcaattcaaaattcaaatttacacccctcttgc |
39005893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 371 - 438
Target Start/End: Complemental strand, 39005829 - 39005762
Alignment:
| Q |
371 |
aagtgaaggaaatataatagaagcatgcagtgatggaaacaataaaacggtagagaaaactttgcttt |
438 |
Q |
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| T |
39005829 |
aagtgaaggaaatataatagaagcatgcagtgatggaaacaataaaacggtagagaaaactttgcttt |
39005762 |
T |
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