View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_high_9 (Length: 439)
Name: NF14464_high_9
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 34888087 - 34888464
Alignment:
| Q |
18 |
aacaaaaacagaggaattctcgaacatgttattgttctgctgttgttcctcggtggaaacgaaaggataacacagcgattgttgttggaagtgtggaaga |
117 |
Q |
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| T |
34888087 |
aacaaaaacagaggaattctcgaacatgttattgttctgctgttattcctcggtggaaacgaaaggataacacagcgattgttgttggaagtgtggaaga |
34888186 |
T |
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| Q |
118 |
attagaaccaatgaaatggaaacagaggaaaatactagagaagaaagatggttaaataggaaaagcaagtagaagatgagtcagaaaaggatatgggttt |
217 |
Q |
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| T |
34888187 |
attagaaccaatgaaatggaaacagaggaaaaaactagagaagaaagatggttaaataggaaaagcaagtagaagatgagtcagaaaaggatatgggttt |
34888286 |
T |
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| Q |
218 |
catgaatagctgtaattcaatacccaataggaaattcaggaacgttacggataaggatcatttcataagcggtcataaatacatttctttgattatcatg |
317 |
Q |
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| T |
34888287 |
catgaatagctgtaattgaatacccaataggaaattcagtaacgttacggataaggatcatttcataagcggtcataaatacatttctttgattatcatg |
34888386 |
T |
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| Q |
318 |
ggccccactatatttctaaattagattcattaataattaatttaataagataaactattgttaatttacatatgctatatta |
399 |
Q |
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| T |
34888387 |
ggccccactatatttctaaattagattcattaa----taatttaataagataaactattgttaatttacatatgctaaatta |
34888464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 31149425 - 31149380
Alignment:
| Q |
96 |
ttgttgttggaagtgtggaagaattagaaccaatgaaatggaaaca |
141 |
Q |
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|||||| |||||||||||||||||| ||||||||||| | |||||| |
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| T |
31149425 |
ttgttgatggaagtgtggaagaattggaaccaatgaattagaaaca |
31149380 |
T |
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