View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_low_1 (Length: 805)
Name: NF14464_low_1
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Original strand, 7400680 - 7401141
Alignment:
| Q |
17 |
cttttataatgcaggttatttagcaactttaccttggttaacaagaatcaaaatagcaattggtgctgctaaaggactagcttttcttcatgaagaggag |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7400680 |
cttttaaaatgcaggttatttagcaactttaccttggttaacaagaatcaaaatagcaattggtgctgctaaaggactagcttttcttcatgaagaggag |
7400779 |
T |
|
| Q |
117 |
aaaccagttatatatagagatgttaaagcctcaaacattctattggatgctgtaagtattcaaatcatgcattttaattatcaaaatttgtagagcaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7400780 |
aaaccagttatatatagagatgttaaagcctcaaacattctattggatgctgtaagtattcaaatcatgcattttaattatcaaaatttgtagagcaaat |
7400879 |
T |
|
| Q |
217 |
tgaatcaacagaaattgacatgaacatatatattaattatttttcaggattacaatgctaagttgtcagattttggtttagcaatagatggaccagataa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7400880 |
tgaatcaacagaaattgacatgaacatatatattaattatttttcaggattacaatgctaagttgtcagattttggtttagcaatagatggaccagataa |
7400979 |
T |
|
| Q |
317 |
agatcaaacacatattacaactcgtgtgatgggtacacacggatatgctgctcctgaatatatcaatacaggtatattctaatctatagtcaaaatcaat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7400980 |
agatcaaacacatattacaactcgtgtgatgggtacacatggatatgctgctcctgaatatatcaatacaggtatattctaatctatagtcaaaatcaat |
7401079 |
T |
|
| Q |
417 |
taaacctaccccttcaattttcatttaggcttaaatatatttttattctttaaaataagata |
478 |
Q |
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| T |
7401080 |
taaacctacccctttaattttcatttaggcttaaatatatttttattctttaaaataagata |
7401141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 541 - 664
Target Start/End: Original strand, 7401203 - 7401325
Alignment:
| Q |
541 |
aaagatgatcacaattgtctggcttttatactcttatagtcaactttttgggatttggattgtgtgaggtgagtgtatgcagctagcagcgtctacatgg |
640 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7401203 |
aaagatgatcacaattgtctggcttttatactcttatagtcaactttt-gggatttggattgtgtgaggtgagtgtatgcagctagcagcgtctacatgg |
7401301 |
T |
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| Q |
641 |
tccgatcaagatcatatggtctaa |
664 |
Q |
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|||||||||||||||||||||||| |
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| T |
7401302 |
tccgatcaagatcatatggtctaa |
7401325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 677 - 789
Target Start/End: Original strand, 7401369 - 7401472
Alignment:
| Q |
677 |
atgtttttaaaatcgaatatagggaacttgaaatatgaactatatatgatcttgatcgaacggtccacatgtttagtgacaagacacga--aagtctcaa |
774 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7401369 |
atgtttttaaaatcgaatatagggaacttgaaatat-----------gatcttgatcgaacggtccacatgtttagtgacaagacacgatcaagtctcaa |
7401457 |
T |
|
| Q |
775 |
cttttcttctttctt |
789 |
Q |
| |
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||||||||||||||| |
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|
| T |
7401458 |
cttttcttctttctt |
7401472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 18327609 - 18327501
Alignment:
| Q |
46 |
taccttggttaacaagaatcaaaatagcaattggtgctgctaaaggactagcttttcttcatgaagaggagaaaccagttatatatagagatgttaaagc |
145 |
Q |
| |
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|||| |||| ||||||||| ||||| || |||| ||||| ||||| |||| ||||||||||||| ||| |||||||||| | ||||||| | ||||| |
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| T |
18327609 |
taccatggtcaacaagaatgaaaattgctgttggagctgcaaaaggtttagcctttcttcatgaagctgagcaaccagttatttttagagatttcaaagc |
18327510 |
T |
|
| Q |
146 |
ctcaaacat |
154 |
Q |
| |
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|||||||| |
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|
| T |
18327509 |
ttcaaacat |
18327501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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