View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_low_11 (Length: 432)
Name: NF14464_low_11
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 39293905 - 39294305
Alignment:
| Q |
13 |
aaaatcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccac |
112 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39293905 |
aaaatcatgtattaaatggaagtgagaacaagttacgctcttagattaaacatggagtt-cttttgatttcagggaaaacatttccaacacttgatccac |
39294003 |
T |
|
| Q |
113 |
gcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
39294004 |
gcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagcttgcgaggcctttcataatggaccttgacc |
39294103 |
T |
|
| Q |
213 |
taaaatgagtgcttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttattgctgcgtt |
312 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39294104 |
taaaatgagtgcttatgtaagcatttccttcagcgtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttattgctgcgtt |
39294203 |
T |
|
| Q |
313 |
ttgctgatttggttgagaagcacagtgctgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagctgaagtacctat |
412 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
39294204 |
ttgctgatttggttgagaagcacaatgccgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagctaacgtacctat |
39294303 |
T |
|
| Q |
413 |
gt |
414 |
Q |
| |
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|| |
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|
| T |
39294304 |
gt |
39294305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 35212811 - 35212746
Alignment:
| Q |
118 |
ggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagct |
183 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||| || |||||||| || |||||| |
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| T |
35212811 |
ggggaagtgattgctcatgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagct |
35212746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 8357821 - 8357421
Alignment:
| Q |
13 |
aaaatcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccac |
112 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8357821 |
aaaatcatgtattgaatggaagtgagaacaaattacgctcttagattaaacatggagttt-ttttgatttcagggaaaacatttccaacacttgatccac |
8357723 |
T |
|
| Q |
113 |
gcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8357722 |
gcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttggcc |
8357623 |
T |
|
| Q |
213 |
taaaatgagtgcttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttattgctgcgtt |
312 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8357622 |
taaaatgaatgcttatgtaagcatttccttcagagtgtcctttcttacatgaacttatattagttttaaaattacgttgatgatgacttattgctgcgtt |
8357523 |
T |
|
| Q |
313 |
ttgctgatttggttgagaagcacagtgctgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagctgaagtacctat |
412 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
8357522 |
ttgctgatttggttgagaagcacaatgcttagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagcttatgtacctat |
8357423 |
T |
|
| Q |
413 |
gt |
414 |
Q |
| |
|
|| |
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|
| T |
8357422 |
gt |
8357421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 44000377 - 44000086
Alignment:
| Q |
13 |
aaaatcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccac |
112 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44000377 |
aaaatcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatccac |
44000278 |
T |
|
| Q |
113 |
gcacaggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacc |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
44000277 |
gcacaggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttgataatggaccttggcc |
44000178 |
T |
|
| Q |
213 |
taaaatgagtgcttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttatt |
304 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||| |||||| || ||||||||||||| ||||||| |
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| T |
44000177 |
taaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattacttatt |
44000086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 301 - 414
Target Start/End: Complemental strand, 44000058 - 43999945
Alignment:
| Q |
301 |
tattgctgcgttttgctgatttggttgagaagcacagtgctgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc |
400 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
44000058 |
tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc |
43999959 |
T |
|
| Q |
401 |
tgaagtacctatgt |
414 |
Q |
| |
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|||||||||||||| |
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| T |
43999958 |
tgaagtacctatgt |
43999945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 26894376 - 26894437
Alignment:
| Q |
82 |
tcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctga |
143 |
Q |
| |
|
||||| ||||||||||||||| | |||||| | |||||||||||||||||||| |||||||| |
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|
| T |
26894376 |
tcaggtaaaacatttccaacattggatccaaggacaggggaagtgattgctcatgttgctga |
26894437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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