View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_low_12 (Length: 432)
Name: NF14464_low_12
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 26126845 - 26126455
Alignment:
| Q |
17 |
aatatcaacttcaataattgagcaatgtcactcacagcagtgttctatccacattgcctaatttactcctaaagattcaagagatcttttagcattagta |
116 |
Q |
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| T |
26126845 |
aatatcaacttcaataattgagcaatgtcactcacagcagtgttctatccacattgcctaatttactcctaaagattcaagagatcttttagcattagta |
26126746 |
T |
|
| Q |
117 |
cagaaaggtttgtaaccttttagcgtttcctctcaaaactgaaacataagtatattccaaattcattactcattaatcattgtcttcaaattactcgtct |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126745 |
cagaaaggtttgtaaccttttggcgtttcctctcaaaactgaaacataagtatattccaaattcattactcattaatcattgtcttcaaattactcgtct |
26126646 |
T |
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| Q |
217 |
tgtcaccttccggatgcatcttctccctcagttaaaatccttgctgccgtcacacaactatccaaaactcagaatcgatgtgagatatctagaagtggga |
316 |
Q |
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| T |
26126645 |
cgtcaccttccggatgcatcttctccctcagttaaaatccttgctgccgttacacaactatccaaaactcaaaatcgatgtgagatatctagaagtggga |
26126546 |
T |
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| Q |
317 |
aaaatttaacaaatatccaaaacttgttcagtgttggctcttttttgttgcca-nnnnnnngttaccaatcagtgggggtgactaggtttg |
406 |
Q |
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| T |
26126545 |
aaaatttaacaaatatccaaaacttgttcagtgttggctcttttttgttgccattttttttgttaccaatcagtgggggtaactaggtttg |
26126455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 45512893 - 45512837
Alignment:
| Q |
123 |
ggtttgtaaccttttagcgtttcctctcaaaactgaaacataagtatattccaaatt |
179 |
Q |
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| T |
45512893 |
ggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatt |
45512837 |
T |
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