View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_low_15 (Length: 407)
Name: NF14464_low_15
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 124 - 395
Target Start/End: Original strand, 4358081 - 4358352
Alignment:
| Q |
124 |
tcacacatgatttaatgcgatacaactttataagataaaatgcagggtactgttttttctttgaatatcgtatgtctgagtgacgtaaaacatctacttt |
223 |
Q |
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| T |
4358081 |
tcacacatgatttaatacgatacaactttataagataaaatgcagggtactgttttttctttgaatatcgtatgtctgagtgacgtaaaacatctacttt |
4358180 |
T |
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| Q |
224 |
tctatatgcataaaatcaaaggtcctatatataattgctatagatttaaggaaaactatgcaggtaggtgcaagtttactgatatctgcaaattctacac |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4358181 |
tctatatgcataaaatcaaaggtcctatatataattgctatagatttaaggaaaactatgcaggtaggtgcaagtttactgccatctgcaaattctacac |
4358280 |
T |
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| Q |
324 |
acnnnnnnngaagcaatttttcatctttgaagtcatattttctcttttctctaagttagtcccttacttaat |
395 |
Q |
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| T |
4358281 |
acaaaaaaagaagcaatttttcatctttgaagtcatattttctcttttctctaagttagtcccttacttaat |
4358352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 4356910 - 4357013
Alignment:
| Q |
18 |
tcctctatttcatatgcttatgactatgtataaatatatttttgttgaataatgtattagcttttgttaccataacactccaaaatatatgcttcataaa |
117 |
Q |
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| T |
4356910 |
tcctctatttcat--gcttatgactatgtataaatatatttttgttgaataatgtattagcctttgttaccataacactccaaaatatatgcttcataaa |
4357007 |
T |
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| Q |
118 |
tatatt |
123 |
Q |
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|||||| |
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| T |
4357008 |
tatatt |
4357013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 130 - 395
Target Start/End: Original strand, 34705961 - 34706223
Alignment:
| Q |
130 |
atgatttaatgcgatacaactttataagataaaatgcagggtactgttttttctttgaatatcgtatgtctgagtgacgtaaaacatctacttttctata |
229 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34705961 |
atgatttaatgtgatacaactttatatgataaaatgcagggtactgttttttctttgaatatcgtatgtttgagtgacgtaaaacatctacttttctata |
34706060 |
T |
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| Q |
230 |
tgcataaaatcaaaggtcctatatataattgctatagatttaaggaaaactatgcaggtaggtgcaagtttactgatatctgcaaattctacacacnnnn |
329 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| | |
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| T |
34706061 |
tgcatagaatcaaaggtcctatttataattgctatagatttaaggaaaactatgcaggtaggtgcaagttgactgctacctgcaaattctacaaa---aa |
34706157 |
T |
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| Q |
330 |
nnngaagcaatttttcatctttgaagtcatattttctcttttctctaagttagtcccttacttaat |
395 |
Q |
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| T |
34706158 |
aaagtagcaaattttcatctttgaattcatattctcttttttctctaagttagtcccttacttaat |
34706223 |
T |
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