View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14464_low_18 (Length: 372)

Name: NF14464_low_18
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14464_low_18
NF14464_low_18
[»] chr2 (1 HSPs)
chr2 (12-65)||(16378367-16378420)
[»] chr5 (1 HSPs)
chr5 (1-60)||(27762800-27762859)
[»] chr1 (2 HSPs)
chr1 (12-54)||(24178407-24178449)
chr1 (12-61)||(24178273-24178322)
[»] scaffold0252 (1 HSPs)
scaffold0252 (13-69)||(10510-10566)
[»] chr6 (1 HSPs)
chr6 (9-61)||(17398725-17398777)
[»] chr4 (1 HSPs)
chr4 (17-69)||(5817269-5817321)


Alignment Details
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 16378420 - 16378367
Alignment:
Q  12 gatattttaattaaataggtcacatcatcattaattactttatattttttctaa 65  Q
    ||||||||||||||||  ||   |||||||||||||||||||||||||||||||    
T  16378420 gatattttaattaaatgtgttttatcatcattaattactttatattttttctaa 16378367  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27762800 - 27762859
Alignment:
Q  1 aagagttggtggatattttaattaaataggtcacatcatcattaattactttatattttt 60  Q
    ||||| ||||||||||||||||||||| |||  || |||||||||||| | |||||||||    
T  27762800 aagagatggtggatattttaattaaatgggtttcaccatcattaattattatatattttt 27762859  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 24178449 - 24178407
Alignment:
Q  12 gatattttaattaaataggtcacatcatcattaattactttat 54  Q
    |||||||||||||||| |||| || ||||||||||||||||||    
T  24178449 gatattttaattaaatgggtcccaccatcattaattactttat 24178407  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 24178322 - 24178273
Alignment:
Q  12 gatattttaattaaataggtcacatcatcattaattactttatatttttt 61  Q
    |||||||||||||||| |||| || ||||||||||| ||||||| |||||    
T  24178322 gatattttaattaaatgggtcccaccatcattaattgctttatacttttt 24178273  T

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Target: scaffold0252 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 10510 - 10566
Alignment:
Q  13 atattttaattaaataggtcacatcatcattaattactttatattttttctaagatt 69  Q
    ||||||||||||||| | || || |||||||||| |||||||| ||||| |||||||    
T  10510 atattttaattaaatggatctcaccatcattaataactttatactttttttaagatt 10566  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 17398725 - 17398777
Alignment:
Q  9 gtggatattttaattaaataggtcacatcatcattaattactttatatttttt 61  Q
    ||||||||||||||||||| | || || ||| |||||||||||| ||||||||    
T  17398725 gtggatattttaattaaatggatcccaccataattaattactttgtatttttt 17398777  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 5817321 - 5817269
Alignment:
Q  17 tttaattaaataggtcacatcatcattaattactttatattttttctaagatt 69  Q
    |||||||||||| ||  || |||||||||||||||| ||||||||| ||||||    
T  5817321 tttaattaaataagttccaccatcattaattactttgtattttttccaagatt 5817269  T

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