View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_low_25 (Length: 324)
Name: NF14464_low_25
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 7330685 - 7330393
Alignment:
| Q |
18 |
ctttggacttttcaaatataatgttgagtttcctttccacaacctttttaaagaattccaaacaatagaaaatatttctttccctcaacnnnnnnnccta |
117 |
Q |
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| T |
7330685 |
ctttggacttttcaaatacaatgttgggtttcctttccacaacctttttaaaaaattccaaacaatagaaaatatttctttccctcaactttttttccta |
7330586 |
T |
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| Q |
118 |
ccta---tctttccttataaacaaacacacccgtacacccgtagtgtgtgacaaaaacaatgcatagttcattctcttccatcaatataccctggatctc |
214 |
Q |
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| T |
7330585 |
cctactatctttccttagaaacaaacacacctgta--------gtgtgtgacaaaagcaatgcatagttcattctcttccatcaatataccttggatctc |
7330494 |
T |
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| Q |
215 |
cggttgtatatgacaccttcatatcattgttgcaaaaatcttctcgatctcttacaacctttgatgtaaggacacctctgagattatctttgtcatgtgt |
314 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7330493 |
cggttgcatatgacaccttcctatcattgttgcaaaaatcttctcgatctcttacaacctttgatgtaaagacacctctgagattatctttgtcatgtgt |
7330394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 28847383 - 28847351
Alignment:
| Q |
19 |
tttggacttttcaaatataatgttgagtttcct |
51 |
Q |
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| T |
28847383 |
tttggacttttcaaatacaatgttgagtttcct |
28847351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 6192244 - 6192343
Alignment:
| Q |
50 |
ctttccacaacctttttaaagaattccaaacaatagaaaatatttctttccctcaacnnnnnnncctac---ctatctttccttataaacaaacacaccc |
146 |
Q |
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| T |
6192244 |
ctttccatagcctttttaaagagttccaaacaatagaaaatatttctttccctcaactttctttcctacccactatctttccttagaaacaaacacaccc |
6192343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 7139155 - 7139187
Alignment:
| Q |
19 |
tttggacttttcaaatataatgttgagtttcct |
51 |
Q |
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| T |
7139155 |
tttggacttttcaaatacaatgttgagtttcct |
7139187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 7139248 - 7139304
Alignment:
| Q |
50 |
ctttccacaacctttttaaagaattccaaacaatagaaaatatttctttccctcaac |
106 |
Q |
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||||||| | |||||||||||| || |||| |||||||||| |||||||| |||||| |
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| T |
7139248 |
ctttccatagcctttttaaagagtttcaaataatagaaaatgtttctttctctcaac |
7139304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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