View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14464_low_26 (Length: 323)
Name: NF14464_low_26
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 29798051 - 29798363
Alignment:
| Q |
6 |
atttggagcttgcaacaaaaactagcgccttattgcaatgttgttgtgttgtctactatcatcaacatcttcaaaactatatggtcttatagaaataaaa |
105 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29798051 |
atttggagcatgcaacaaaaattagcgccttattgcaatgttgttgtgttgtctactatcatcaacatcttcaaaactatatggttttatagaaataaaa |
29798150 |
T |
|
| Q |
106 |
agaggttcgtaaactctttcattccttggaagtcttccatacccatgagtatttctattgtgtctctattaggaaatcatacaagttagacaact-aata |
204 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29798151 |
agaggttcataaactctttcattccttggaagtcttccatacccatgagtatttctattgtgtctctattaggaaatcatacaagttagacaactaaata |
29798250 |
T |
|
| Q |
205 |
attcaatcagatatttt---gtatcaaggccttaatatgaaaggctccccgaattaaagaaatcatttgtcaatctccttttttaaaccggatcaaatgc |
301 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
29798251 |
attcaatcagatattttgtagtatcaaggccttaatatgaaaggctccccgaattaaagaaatcatttgtcaatctcctctttttaaccggatcaaatgc |
29798350 |
T |
|
| Q |
302 |
aacattgatgatg |
314 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29798351 |
aacattgatgatg |
29798363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University