View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_low_28 (Length: 310)
Name: NF14464_low_28
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 31876665 - 31876387
Alignment:
| Q |
18 |
attacaagaaccattgcattcatatttcatttgatttttaaaaacattgtgaagaatatgaaaatcaacatgggaattccaatagttacactcctccttc |
117 |
Q |
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| T |
31876665 |
attacaagaaccattgcattcatatttcatttgatttttaaaaacattgtgaagaatatgaaaatcaacatgggaattccaatagttacactcctccttc |
31876566 |
T |
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| Q |
118 |
ttctacttgtttctataatctccccatcccagaattatcatttcataatctcattgcttctactgttttaccccttacaaaacagtttgtgtcacctaac |
217 |
Q |
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| T |
31876565 |
ttctacttgtttctataatctccccatcccagaattatcatttcataatctcattgcttctactgttttaccccttacaaaacagtttgtgtcacctaac |
31876466 |
T |
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| Q |
218 |
gggtaggccatcaatgccatttatgtatcctcatatttcttcctcaacattttcattccaaaacttatgactaactcat |
296 |
Q |
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| T |
31876465 |
gggtaggccatcaatgccatttatgtatcctcatatttcttcctcaacattttcattccaaaacttatgactaactcat |
31876387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 31936573 - 31936490
Alignment:
| Q |
29 |
cattgcattcatatttcatttgatttttaaaaacattgtgaaga---atatgaaaatcaacatgggaattccaatagttacact |
109 |
Q |
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| T |
31936573 |
cattgcattcatatttaatttgatttctaaaaacattgtgaagatagatatgaaaatcaatatgggaattccactagttacact |
31936490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 885824 - 885876
Alignment:
| Q |
93 |
attccaatagttacactcctccttcttctacttgtttctataatctccccatc |
145 |
Q |
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| T |
885824 |
attccactagctacactcctccttttgctacttatttctataatttccccatc |
885876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 31899335 - 31899388
Alignment:
| Q |
92 |
aattccaatagttacactcctccttcttctacttgtttctataatctccccatc |
145 |
Q |
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| T |
31899335 |
aattccactagctacactcctccttctgctactcatttctataatttccccatc |
31899388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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