View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_low_3 (Length: 522)
Name: NF14464_low_3
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Original strand, 37140010 - 37140519
Alignment:
| Q |
11 |
gaagaatatgggtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatcctgtaa |
110 |
Q |
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| T |
37140010 |
gaagaaaatgggtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatcctgtaa |
37140109 |
T |
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| Q |
111 |
taataacactctcttaacaacatttcatttgtttcactttctctttcttattttatgctatagatatttgaacaaatagaatggaaaaaa-tagtgatca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37140110 |
taataacactctcttaacaacatttcatttgtttcactttctctttcttattttatgctatagatatttgaacaaatagaatggaaaaaaatagtgatca |
37140209 |
T |
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| Q |
210 |
ttttattagttaaagatttttatcatgcaatacatggggggaaccttcaatttcatccgtttttcccaaattttaggggaagaacattggaatgatatac |
309 |
Q |
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| T |
37140210 |
ttttattagat-----tttttatcatgcaatacatggggggaaccttcaatttcatccggttttctcaaattttaggggaagaacattggaatgatatat |
37140304 |
T |
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| Q |
310 |
at--ctatgnnnnnnngaactatactataagtttatatatattgctggttataaatatttttctttttggtatatctcattaatcatgtattgccaaaat |
407 |
Q |
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| T |
37140305 |
atatctatgaaaaaaagaactatactataagtttatatatattgctggttataaatatttttctttttggtatatctcattaatcatgtattgccaaaat |
37140404 |
T |
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| Q |
408 |
ctgcagaaacagaaactggctctggcaaagcaattaaatcttcgtccacgtcaagtagaagtttggtttcagaatagaagagcaaggtaactaagggcac |
507 |
Q |
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| T |
37140405 |
ctgcagaaacagaaactggctctggcaaagcaattaaatcttcgtccacgtcaagtagaagtttggtttcagaatagaagagcaaggtaacaaagggcac |
37140504 |
T |
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| Q |
508 |
attatcttttctgta |
522 |
Q |
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| T |
37140505 |
attatcttttctgta |
37140519 |
T |
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Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 23335947 - 23336039
Alignment:
| Q |
18 |
atgggtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatcctgtaa |
110 |
Q |
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| T |
23335947 |
atgggtcaactaggaagaaactaagactctctaaagatcaatctgcttttcttgaagaaagtttcaaagaacacaccactcttaatcctgtaa |
23336039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 23336164 - 23336215
Alignment:
| Q |
444 |
aatcttcgtccacgtcaagtagaagtttggtttcagaatagaagagcaaggt |
495 |
Q |
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| T |
23336164 |
aatcttagtcctcgtcaagttgaagtttggtttcaaaatagaagagcaaggt |
23336215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 25902322 - 25902258
Alignment:
| Q |
26 |
acaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaaca |
90 |
Q |
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| T |
25902322 |
acaaggaagaaacttaggctctctaaggatcaatctgcttttcttgaagaaagtttcaaagaaca |
25902258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 496
Target Start/End: Complemental strand, 25901941 - 25901857
Alignment:
| Q |
412 |
agaaacagaaactggctctggcaaagcaattaaatcttcgtccacgtcaagtagaagtttggtttcagaatagaagagcaaggta |
496 |
Q |
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| T |
25901941 |
agaaacaaaaactggctcttgcaaaacaactcaatcttcgccctcgccaagtagaagtctggttccaaaacagaagagcaaggta |
25901857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 40299685 - 40299733
Alignment:
| Q |
68 |
cttgaagatagcttcaaagaacacaccactctcaatcctgtaataataa |
116 |
Q |
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| T |
40299685 |
cttgaagaaagcttcaaagaacacagcactctcaatcctgtaatcataa |
40299733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 41452460 - 41452397
Alignment:
| Q |
29 |
aggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacaca |
92 |
Q |
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| T |
41452460 |
aggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaacaca |
41452397 |
T |
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