View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14464_low_34 (Length: 273)
Name: NF14464_low_34
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_34 |
 | |
|
| [»] scaffold0181 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 3358943 - 3358704
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3358943 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
3358844 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3358843 |
aagagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
3358744 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3358743 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
3358704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 3342034 - 3341795
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3342034 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccagatatacgtcgatggtttctgtcaagat |
3341935 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3341934 |
aagagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
3341835 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3341834 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
3341795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 9088138 - 9087899
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9088138 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
9088039 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9088038 |
aagagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
9087939 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9087938 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
9087899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 32517259 - 32517020
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32517259 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgccgatggtttctgtcaagat |
32517160 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32517159 |
aagagactcagaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
32517060 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32517059 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
32517020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 45881123 - 45881362
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45881123 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgccgatggtttctgtcaagat |
45881222 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45881223 |
aagagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
45881322 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45881323 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
45881362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 35813741 - 35813502
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35813741 |
tggaggtgctagaatgattgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
35813642 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35813641 |
aagagactcggaagtgaaagaatctgcaacgactgaagcatcagtttcatggctctcattcttagtatcaataaaagattgaccaatgaccatccatatt |
35813542 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35813541 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
35813502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 2315769 - 2316001
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||||||| ||||||||| |||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
2315769 |
tggaggtgctaggatggttgaattcctcagcatctgtagggcttaccctcctcttatcaggtgcatttgccggatataggtcgatggattctgtcaagat |
2315868 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
| ||||||| ||| |||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2315869 |
aggagactccgaaatgaaagaatctgcaactactgaagcatcagtttcattgctctcattcctagtatcaataaaagat-------tgaccatccatatt |
2315961 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
| |||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
2315962 |
ggacggagttgaggatcttgttgcgttttccactatatgc |
2316001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 26275797 - 26276034
Alignment:
| Q |
20 |
gaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26275797 |
gaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataa |
26275896 |
T |
|
| Q |
120 |
gagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattga |
219 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26275897 |
gagactcagaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattaaccaatgaccatccatattga |
26275996 |
T |
|
| Q |
220 |
acggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26275997 |
acggagttaaggatcttgtcacgttttccactatatgc |
26276034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 39773933 - 39774172
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39773933 |
tggaggtgctagaatggttgaattcctcagcatttgcagggtttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
39774032 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39774033 |
aagagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
39774132 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39774133 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
39774172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 5157681 - 5157444
Alignment:
| Q |
20 |
gaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5157681 |
gaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgtcggatatacgtcgatggtttctgtcaagataa |
5157582 |
T |
|
| Q |
120 |
gagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattga |
219 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5157581 |
gagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattga |
5157482 |
T |
|
| Q |
220 |
acggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5157481 |
acggagttaaggatcttgtcacgttttccactatatgc |
5157444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 7331479 - 7331718
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7331479 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgccgatggtttctgtcaagat |
7331578 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7331579 |
aagagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
7331678 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7331679 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
7331718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 37644775 - 37645011
Alignment:
| Q |
20 |
gaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37644775 |
gaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgtcggatatacgtcgatggtttctgtcaagataa |
37644874 |
T |
|
| Q |
120 |
gagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattga |
219 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37644875 |
gagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattga |
37644974 |
T |
|
| Q |
220 |
acggagttaaggatcttgtcacgttttccactgtatg |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37644975 |
acggagttaaggatcttgtcacgttttccactatatg |
37645011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 21648049 - 21647810
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
21648049 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgttttccggatatacgtcgatggtttttgtcaagat |
21647950 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21647949 |
aagagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
21647850 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21647849 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
21647810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 29982521 - 29982757
Alignment:
| Q |
20 |
gaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29982521 |
gaggtgctagaatggttgaattcctcagcatttgcaaggcttactttcctcttataaggtgcgtttgtcggatatacgtcgatggtttctgtcaagataa |
29982620 |
T |
|
| Q |
120 |
gagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattga |
219 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29982621 |
gagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattga |
29982720 |
T |
|
| Q |
220 |
acggagttaaggatcttgtcacgttttccactgtatg |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29982721 |
acggagttaaggatcttgtcacgttttccactatatg |
29982757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 15322257 - 15322023
Alignment:
| Q |
21 |
aggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15322257 |
aggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataag-tgcgttt-ccggatatacgtcgatggtttctgtcaagataag |
15322160 |
T |
|
| Q |
121 |
agactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattgaa |
220 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15322159 |
agactcagaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattgga |
15322060 |
T |
|
| Q |
221 |
cggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15322059 |
cggagttaaggatcttgtcacgttttccactatatgc |
15322023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 29380168 - 29379938
Alignment:
| Q |
21 |
aggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29380168 |
aggtgctagaatggttgaattcctcagcatttgcagggcttacttttctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataag |
29380069 |
T |
|
| Q |
121 |
agactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattgaa |
220 |
Q |
| |
|
|||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29380068 |
agactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattgaa |
29379969 |
T |
|
| Q |
221 |
cggagttaaggatcttgtcacgttttccact |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29379968 |
cggagttaaggatcttgtcacgttttccact |
29379938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 2520002 - 2519766
Alignment:
| Q |
20 |
gaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2520002 |
gaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagataa |
2519903 |
T |
|
| Q |
120 |
gagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatattga |
219 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2519902 |
gagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgacc-atgaccatccatattga |
2519804 |
T |
|
| Q |
220 |
acggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2519803 |
acggagttaaggatcttgtcacgttttccactatatgc |
2519766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 17677 - 17916
Alignment:
| Q |
18 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgccggatatacgtcgatggtttctgtcaagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17677 |
tggaggtgctagaatggttgaattcctcagcatttgcagggcttactttcctcttataaggtgcgtttgttggatatacgtcgatggtttctgtcaagat |
17776 |
T |
|
| Q |
118 |
aagagactcagaagtgaacgaatctacaactactgaagcatcagtttcatggctctcattcctagtatcaataaaagattgaccaatgaccatccatatt |
217 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17777 |
aagagactcggaagtgaaagaatctgcaactactgaagcatcagtttcatcgctctcattcctagtatcaataaaagatcgaccaatgaccatccatatt |
17876 |
T |
|
| Q |
218 |
gaacggagttaaggatcttgtcacgttttccactgtatgc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17877 |
gaacggagttaaggatcttgtcacgttttccactatatgc |
17916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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