View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14464_low_38 (Length: 251)

Name: NF14464_low_38
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14464_low_38
NF14464_low_38
[»] chr2 (6 HSPs)
chr2 (1-236)||(21189275-21189506)
chr2 (60-236)||(2590428-2590605)
chr2 (92-236)||(18739124-18739268)
chr2 (59-236)||(35969290-35969464)
chr2 (92-236)||(14433612-14433757)
chr2 (100-230)||(1043114-1043243)
[»] chr5 (6 HSPs)
chr5 (43-236)||(39292016-39292203)
chr5 (84-230)||(18594767-18594913)
chr5 (112-235)||(26703031-26703155)
chr5 (112-235)||(26972764-26972888)
chr5 (2-33)||(39291957-39291988)
chr5 (130-215)||(13291952-13292037)
[»] chr8 (9 HSPs)
chr8 (60-236)||(1788912-1789090)
chr8 (61-217)||(21347040-21347197)
chr8 (95-236)||(39655712-39655854)
chr8 (127-230)||(17028350-17028453)
chr8 (127-230)||(17558786-17558889)
chr8 (134-236)||(21185334-21185436)
chr8 (111-228)||(38678666-38678781)
chr8 (127-195)||(38676303-38676371)
chr8 (86-173)||(4326750-4326837)
[»] chr6 (3 HSPs)
chr6 (92-228)||(19697866-19698002)
chr6 (160-235)||(6591863-6591938)
chr6 (84-164)||(15517993-15518073)
[»] chr1 (10 HSPs)
chr1 (84-227)||(24981184-24981327)
chr1 (112-236)||(12141665-12141789)
chr1 (86-224)||(1953642-1953780)
chr1 (130-228)||(4242590-4242688)
chr1 (86-228)||(47580349-47580493)
chr1 (168-236)||(9111554-9111622)
chr1 (84-195)||(51465449-51465558)
chr1 (96-230)||(38825496-38825630)
chr1 (111-215)||(39197192-39197297)
chr1 (97-215)||(43254081-43254199)
[»] chr7 (8 HSPs)
chr7 (61-236)||(11673929-11674105)
chr7 (113-236)||(39426464-39426587)
chr7 (130-236)||(31206639-31206745)
chr7 (130-236)||(31210088-31210194)
chr7 (111-236)||(3850552-3850678)
chr7 (176-236)||(22301164-22301224)
chr7 (84-217)||(5434893-5435027)
chr7 (130-215)||(15569565-15569650)
[»] chr4 (9 HSPs)
chr4 (127-236)||(6667732-6667841)
chr4 (84-236)||(13010546-13010697)
chr4 (127-236)||(6671404-6671507)
chr4 (130-236)||(44643451-44643556)
chr4 (152-236)||(895463-895547)
chr4 (12-131)||(20058180-20058294)
chr4 (175-236)||(20058116-20058177)
chr4 (131-207)||(4747190-4747264)
chr4 (131-215)||(31767481-31767565)
[»] scaffold0014 (1 HSPs)
scaffold0014 (61-236)||(82549-82726)
[»] scaffold0028 (2 HSPs)
scaffold0028 (130-236)||(110120-110225)
scaffold0028 (130-236)||(127699-127804)
[»] chr3 (3 HSPs)
chr3 (48-229)||(11634190-11634371)
chr3 (152-215)||(26445127-26445191)
chr3 (95-215)||(19930069-19930188)
[»] scaffold0076 (1 HSPs)
scaffold0076 (131-236)||(6773-6877)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 21189275 - 21189506
Alignment:
Q  1 catatatatatacccacatacatactctctctcannnnnnnattatgtgttcctctaaacacaatcattttctttcatctaa-gtattgagcttctgggt 99  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  21189275 catatatatatacccacatacatactctctctcattt-----ttatgtgttcctctaaacacaattattttctctcatctaaagtattgagcttctgggt 21189369  T
Q  100 tacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgc 199  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||  || ||||||| |||    
T  21189370 tacatctccggttatctttgagattattttgagttgttctgtcacctccagttatgattcataacggggaataactgttgtatccggggaggatatgcgc 21189469  T
Q  200 ttatgaggcggataaaattctcaaggacagtaactat 236  Q
    |||||||||||||||||| |||||||||||| |||||    
T  21189470 ttatgaggcggataaaatcctcaaggacagtgactat 21189506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 60 - 236
Target Start/End: Original strand, 2590428 - 2590605
Alignment:
Q  60 cacaatcattttctttcatctaag-tattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgatt 158  Q
    |||||| ||||||| ||||||||  ||||||| |||||||||| ||||||   ||||| |||||| | |||||||||||||||||||| | |||||||||    
T  2590428 cacaattattttctctcatctaaaatattgagtttctgggttatatctcctgatatctatgagataaatttgagttgttctgtcacctccggttatgatt 2590527  T
Q  159 cataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||| |||||||||||| |||||    
T  2590528 cataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcgaataaaatcctcaaggacagtgactat 2590605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 18739268 - 18739124
Alignment:
Q  92 ttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaagg 191  Q
    ||||||||||||||||    ||| |||||||| | || ||| ||||||||||||| |  |||||||||||||||||||||||| |||||||  ||| |||    
T  18739268 ttctgggttacatctcatgatatatttgagataaattcgagctgttctgtcacctccgattatgattcataacggggaagaaccgttgtattgtgggagg 18739169  T
Q  192 atatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    |||| ||||||||||||||||||||| |||||||||||| |||||    
T  18739168 atatgcgcttatgaggcggataaaatcctcaaggacagtgactat 18739124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 35969464 - 35969290
Alignment:
Q  59 acacaatcattttctttcatctaag-tattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgat 157  Q
    ||||||| ||||||| ||||||||  ||||||| |||| |||||||||| || ||||||||||||| | ||||||||||||||| |||| | ||||||||    
T  35969464 acacaattattttctctcatctaaaatattgagtttctaggttacatcttcggttatctttgagataaatttgagttgttctgttacctcctgttatgat 35969365  T
Q  158 tcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    ||||||||||||||||||||| || | ||    ||||| ||||| |||||||||||||||  ||||||||||| |||||    
T  35969364 tcataacggggaagaactgtt-taacatg---tgatatgcgcttttgaggcggataaaatcttcaaggacagtgactat 35969290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 14433757 - 14433612
Alignment:
Q  92 ttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaac-tgttgtatcttggaag 190  Q
    |||| ||||||||||||   |||||||||||| | |||||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||||| |     
T  14433757 ttctaggttacatctcctgatatctttgagataaatttgagttattctgtcacctttggttatgattcataacggggaagaacatgttgtatcttgggaa 14433658  T
Q  191 gatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    ||| |   ||||||||||||||||||| | |||||||||| |||||    
T  14433657 gatgtgtacttatgaggcggataaaatccacaaggacagtgactat 14433612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 1043114 - 1043243
Alignment:
Q  100 tacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgc 199  Q
    |||||||||  ||||||||||||| | |||||  ||||||||||||  |  ||||||||||||||||| |||||| |||||||| ||| ||||||| |||    
T  1043114 tacatctcctgttatctttgagatgaatttgacctgttctgtcacccccgattatgattcataacggg-aagaacggttgtatcctgggaggatatgcgc 1043212  T
Q  200 ttatgaggcggataaaattctcaaggacagt 230  Q
     |||||| |||||||||| ||||||||||||    
T  1043213 ctatgagacggataaaatcctcaaggacagt 1043243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 39292016 - 39292203
Alignment:
Q  43 ttatgtgttcctctaaacacaatcattttctttcatctaa-gtattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgt 141  Q
    ||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  39292016 ttatgtgtttctctaaacacaattattttctctcatctaaagtattgagcttctgggttacatctccggttatctttgagattattttgagttgttatgt 39292115  T
Q  142 caccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    ||||       |||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||||||||||| || ||||||||| |||||    
T  39292116 cacc-------atgattcataacggagaagaactgttgtattctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactat 39292203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 18594767 - 18594913
Alignment:
Q  84 tattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatc 183  Q
    ||||||| || ||||||||||||||   ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18594767 tattgagtttttgggttacatctcctgatatctttgacataaatttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatc 18594866  T
Q  184 ttggaaggatatacgcttatgaggcggataaaattctcaaggacagt 230  Q
     ||  || |||| |||||||||||||||||||||  |||||||||||    
T  18594867 ctgtgagaatatgcgcttatgaggcggataaaatcttcaaggacagt 18594913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 26703155 - 26703031
Alignment:
Q  112 tatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaact-gttgtatcttggaaggatatacgcttatgaggcgg 210  Q
    ||||| |||||| | |||||  ||||||||||||| | ||| ||||||||| | | |||||||| |||||||||||| ||||||| || |||||||||||    
T  26703155 tatctgtgagataaatttgaactgttctgtcacctccggttttgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcgg 26703056  T
Q  211 ataaaattctcaaggacagtaacta 235  Q
    ||||||| |||||||||||| ||||    
T  26703055 ataaaatcctcaaggacagtgacta 26703031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 26972888 - 26972764
Alignment:
Q  112 tatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaact-gttgtatcttggaaggatatacgcttatgaggcgg 210  Q
    ||||| |||||| | |||||  ||||||||||||| | ||| ||||||||| | | |||||||| |||||||||||| ||||||| || |||||||||||    
T  26972888 tatctgtgagataaatttgaactgttctgtcacctccggttttgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcgg 26972789  T
Q  211 ataaaattctcaaggacagtaacta 235  Q
    ||||||| |||||||||||| ||||    
T  26972788 ataaaatcctcaaggacagtgacta 26972764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 39291957 - 39291988
Alignment:
Q  2 atatatatatacccacatacatactctctctc 33  Q
    ||||||||||||||||||||||||||||||||    
T  39291957 atatatatatacccacatacatactctctctc 39291988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 13291952 - 13292037
Alignment:
Q  130 gagttgttctgtcaccttcagttatgattcataacggggaagaac-tgttgtatcttggaaggatatacgcttatgaggcggataaa 215  Q
    |||||||||| |||||| | | ||||||||||| | | ||| ||| ||||||||| ||| ||||||| |||||||||||||||||||    
T  13291952 gagttgttctatcacct-ctgatatgattcatatcagagaataacctgttgtatcctgggaggatatgcgcttatgaggcggataaa 13292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 1789090 - 1788912
Alignment:
Q  60 cacaatcattttctttcatctaag-tattgagctt-ctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgat 157  Q
    |||||||||||||| ||||| ||  ||||||| || ||||||||||||||    |||||||||||| | |||||||||||||||||||| | ||||||||    
T  1789090 cacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccggttatgat 1788991  T
Q  158 tcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  1788990 tcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactat 1788912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 21347040 - 21347197
Alignment:
Q  61 acaatcattttctttcatctaa-gtattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattc 159  Q
    ||||| ||||||| ||||| || |||||||| || ||||||||||||||| || |||||||||||||||| |||||||| |||||||||| |||||||||    
T  21347040 acaattattttctctcatccaaagtattgagtttgtgggttacatctccggttgtctttgagattattttcagttgttccgtcaccttcatttatgattc 21347139  T
Q  160 ataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaat 217  Q
    |||||| | |||||| |||||||||||| |||||||  ||||||||||||||||||||    
T  21347140 ataacgtgaaagaacagttgtatcttgggaggatatgtgcttatgaggcggataaaat 21347197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 39655854 - 39655712
Alignment:
Q  95 tgggttacatctccga-ttatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggat 193  Q
    |||||||||||||| | ||||||||||||| | |||||| ||||||||||| | | ||||||||||||||||| |||||||||||||||| ||| |||||    
T  39655854 tgggttacatctccaacttatctttgagataaatttgagctgttctgtcacatccggttatgattcataacggagaagaactgttgtatcatgggaggat 39655755  T
Q  194 atacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    || | ||||||||||||||||||| |||||||||||| |||||    
T  39655754 atgcacttatgaggcggataaaatcctcaaggacagtgactat 39655712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 17028350 - 17028453
Alignment:
Q  127 tttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaagga 226  Q
    |||||| |||| |||||||| | ||||||||||||||||||||||||||||  |||| ||| ||||||| |||| |||||||||||||||| ||||||||    
T  17028350 tttgagctgttgtgtcacctccggttatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaagga 17028449  T
Q  227 cagt 230  Q
    ||||    
T  17028450 cagt 17028453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 17558786 - 17558889
Alignment:
Q  127 tttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaagga 226  Q
    |||||| |||| |||||||| | ||||||||||||||||||||||||||||  |||| ||| ||||||| |||| |||||||||||||||| ||||||||    
T  17558786 tttgagctgttgtgtcacctccggttatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaagga 17558885  T
Q  227 cagt 230  Q
    ||||    
T  17558886 cagt 17558889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 21185436 - 21185334
Alignment:
Q  134 tgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaac 233  Q
    |||| |||||||| | |||||||||||||||||||||||||| || |||  ||| ||||||| ||||||||||||||||||||| |||||||||||| ||    
T  21185436 tgttttgtcacctccggttatgattcataacggggaagaactattatatgctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgac 21185337  T
Q  234 tat 236  Q
    |||    
T  21185336 tat 21185334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 38678666 - 38678781
Alignment:
Q  111 ttatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcgg 210  Q
    |||||||| |||| | |||||||||||||||||||| |  |||||||||||||||||||  |||||||||||| || |||||||| |||||||||| |||    
T  38678666 ttatctttaagataaatttgagttgttctgtcacctccgattatgattcataacgggga--aactgttgtatcctgtaaggatatgcgcttatgagacgg 38678763  T
Q  211 ataaaattctcaaggaca 228  Q
    || |||| ||||| ||||    
T  38678764 atcaaatcctcaaagaca 38678781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 38676303 - 38676371
Alignment:
Q  127 tttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatat 195  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||| ||||||||| ||| |||||||    
T  38676303 tttgagttgttctgtcacctccgattatgattcataacggggaagaattgttgtatcctgggaggatat 38676371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 4326837 - 4326750
Alignment:
Q  86 ttgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaa 173  Q
    ||||| |||||| |||||||| | |  ||||||| ||| | |||||||||||||||||| | | ||||| ||||||||||| ||||||    
T  4326837 ttgagtttctggattacatcttctaacatctttgtgataaatttgagttgttctgtcacatcctgttatcattcataacggagaagaa 4326750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 228
Target Start/End: Complemental strand, 19698002 - 19697866
Alignment:
Q  92 ttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaagg 191  Q
    ||||||||||||||||    |||||||||||| | |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||| ||| |||    
T  19698002 ttctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccgattatgattcataacggggaagaactgttgtatcctgggagg 19697903  T
Q  192 atatacgcttatgaggcggataaaattctcaaggaca 228  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  19697902 atatgcgcttatgaggcggataaaatcctcaaggaca 19697866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 6591938 - 6591863
Alignment:
Q  160 ataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaacta 235  Q
    ||||||| |||||||||||| ||| ||| ||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  6591938 ataacggagaagaactgttgcatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgacta 6591863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 15517993 - 15518073
Alignment:
Q  84 tattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataac 164  Q
    ||||||| |||||||||||||||||   ||||||| |||| |  ||||||||||||||||||| | ||||||||| |||||    
T  15517993 tattgagtttctgggttacatctcctcatatctttaagataaagttgagttgttctgtcacctccggttatgatttataac 15518073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 24981327 - 24981184
Alignment:
Q  84 tattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatc 183  Q
    ||||||| ||||| |||||||||||   |||||||||||| | ||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||    
T  24981327 tattgagtttctgtgttacatctcctgatatctttgagataaatttgagttgttctatcatctccggttatgattcataacggggaagaactgttgtatc 24981228  T
Q  184 ttggaaggatatacgcttatgaggcggataaaattctcaaggac 227  Q
     ||| |||||||  |||||||||||||||||||| |||||||||    
T  24981227 ctgggaggatatgtgcttatgaggcggataaaatcctcaaggac 24981184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 12141789 - 12141665
Alignment:
Q  112 tatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcgga 211  Q
    ||||||||| || | ||||||||||||||||||||  |||||||||||||||||||||| || ||||||||| ||| ||||||| |||||||||||||||    
T  12141789 tatctttgatataaatttgagttgttctgtcacctctagttatgattcataacggggaataattgttgtatcctgggaggatatgcgcttatgaggcgga 12141690  T
Q  212 taaaattctcaaggacagtaactat 236  Q
    |||||| |||||||||||| |||||    
T  12141689 taaaatcctcaaggacagtgactat 12141665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 1953642 - 1953780
Alignment:
Q  86 ttgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatctt 185  Q
    ||||| |||||||||||||||||    ||||||| ||| | |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |    
T  1953642 ttgagtttctgggttacatctcctgacatctttgtgataaatttgagttgttctgtcacctcccgttatgattcataacagggaagaactgttgtatcct 1953741  T
Q  186 ggaaggatatacgcttatgaggcggataaaattctcaag 224  Q
    || ||||||| |||||||||||| |||||||| ||||||    
T  1953742 gggaggatattcgcttatgaggcagataaaatcctcaag 1953780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 4242688 - 4242590
Alignment:
Q  130 gagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggaca 228  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||| ||| ||||||| |||| ||||| |||||||||| ||||||||||    
T  4242688 gagttgttctgtcaccttcgattatgattcataacggggaagaacagttgtatcctgggaggatatgcgctcatgagtcggataaaatcctcaaggaca 4242590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 47580349 - 47580493
Alignment:
Q  86 ttgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatctt 185  Q
    ||||| |||||||||||||||||    ||||||| ||| | |||||||| |||||||| |||  ||||||||||||||||||||||| |||||||||| |    
T  47580349 ttgagtttctgggttacatctcctgacatctttgtgataaatttgagttcttctgtcatctttggttatgattcataacggggaagacctgttgtatcct 47580448  T
Q  186 g--gaaggatatacgcttatgaggcggataaaattctcaaggaca 228  Q
    |  | ||||||| |||||||||||| ||||||||  |||||||||    
T  47580449 ggtggaggatattcgcttatgaggcagataaaatcttcaaggaca 47580493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 9111622 - 9111554
Alignment:
Q  168 gaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    |||||||||||||||| ||| | ||||| ||||||||||||||||||||| |||||||||||| |||||    
T  9111622 gaagaactgttgtatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactat 9111554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 51465449 - 51465558
Alignment:
Q  84 tattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatc 183  Q
    ||||||| |||||||||||||||||   |||||  ||||| | ||||||||||||||| |||| |   |||||||||||||||| |||||||||||||||    
T  51465449 tattgagtttctgggttacatctcctgatatct--gagataaatttgagttgttctgtaacctccgagtatgattcataacgggaaagaactgttgtatc 51465546  T
Q  184 ttggaaggatat 195  Q
     |||||| ||||    
T  51465547 ctggaagaatat 51465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 38825630 - 38825496
Alignment:
Q  96 gggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaac-tgttgtatcttggaaggata 194  Q
    ||||||||||| |  ||||||||||||| | ||  |||||||||| ||||||  | ||||||||||| | | ||||||| ||||||||| ||| ||||||    
T  38825630 gggttacatcttctgttatctttgagataaattcaagttgttctgccacctt-tgatatgattcatagcagagaagaacttgttgtatcctgggaggata 38825532  T
Q  195 tacgcttatgaggcggataaaattctcaaggacagt 230  Q
    | || |||||||| ||||||||| || |||||||||    
T  38825531 tgcgtttatgaggaggataaaatccttaaggacagt 38825496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 39197192 - 39197297
Alignment:
Q  111 ttatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaac-tgttgtatcttggaaggatatacgcttatgaggcg 209  Q
    |||||||||||||   ||||||||||||||||||||||   |||||||||||  || || | || ||||||||| ||| ||||||| ||||||||||||     
T  39197192 ttatctttgagatatatttgagttgttctgtcaccttcgactatgattcatattggagagggacttgttgtatcctggtaggatatgcgcttatgaggca 39197291  T
Q  210 gataaa 215  Q
    ||||||    
T  39197292 gataaa 39197297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 43254081 - 43254199
Alignment:
Q  97 ggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaac-tgttgtatcttggaaggatat 195  Q
    ||||||||||||   ||||||||||||   ||  |||||||||||||||| | | |||||||||||   ||||||||| ||||||||| ||| |||||||    
T  43254081 ggttacatctcctgctatctttgagatagattcaagttgttctgtcacct-ctgatatgattcatatatgggaagaacatgttgtatcctgggaggatat 43254179  T
Q  196 acgcttatgaggcggataaa 215  Q
     ||||||||||||| |||||    
T  43254180 gcgcttatgaggcgaataaa 43254199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 11673929 - 11674105
Alignment:
Q  61 acaatcattttctttcatctaag-tattgagctt-ctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgatt 158  Q
    ||||||||||||| ||||| ||  ||||||| || ||||||||||||||    |||||||||||| | |||||||||||||||||||| |  ||||||||    
T  11673929 acaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccgattatgatt 11674028  T
Q  159 cataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    ||||||||| || |||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  11674029 cataacggg-aacaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactat 11674105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 39426587 - 39426464
Alignment:
Q  113 atctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggat 212  Q
    ||||||| ||| | |||||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||||| ||||||| |||||||||| |||||    
T  39426587 atctttgtgataaatttgagttgttctgtcacctccggttatgattcataacagggaagaactgttttatcttgggaggatattcgcttatgagacggat 39426488  T
Q  213 aaaattctcaaggacagtaactat 236  Q
    ||||| |||||||||||| |||||    
T  39426487 aaaatcctcaaggacagtgactat 39426464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 31206745 - 31206639
Alignment:
Q  130 gagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacag 229  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||| ||||||||| ||||| |||||    
T  31206745 gagttgttctgtcacctccagttatgattcataacggggaagaactgttgtatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacag 31206646  T
Q  230 taactat 236  Q
    | |||||    
T  31206645 tgactat 31206639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 31210194 - 31210088
Alignment:
Q  130 gagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacag 229  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||||||||| |  || ||||||| | ||||||||||||||||||| |||||||||||    
T  31210194 gagttgttctgtcacctccgattatgattcataacggggaagaactgttgtaccccgggaggatatgcacttatgaggcggataaaatcctcaaggacag 31210095  T
Q  230 taactat 236  Q
    | |||||    
T  31210094 tgactat 31210088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 3850678 - 3850552
Alignment:
Q  111 ttatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaact-gttgtatcttggaaggatatacgcttatgaggcg 209  Q
    ||||||||||||| | ||||||||||||| ||||||   | ||||||||||| || ||||||||| |||||||| | | ||||||| |||||||||||||    
T  3850678 ttatctttgagataaatttgagttgttctatcacctctgggtatgattcataccgaggaagaactcgttgtatcataggaggatatgcgcttatgaggcg 3850579  T
Q  210 gataaaattctcaaggacagtaactat 236  Q
     |||||||  ||||||||||| |||||    
T  3850578 tataaaatcatcaaggacagtgactat 3850552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 22301224 - 22301164
Alignment:
Q  176 gttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  22301224 gttgtatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactat 22301164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 5435027 - 5434893
Alignment:
Q  84 tattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaa-ctgttgtat 182  Q
    ||||||| || |||||||||||| |   ||| |||||||| | ||| ||||||||||||| ||  | ||||||||| ||||||||||||| || ||||||    
T  5435027 tattgagtttatgggttacatcttctgatatttttgagataaattttagttgttctgtcatctctatttatgattcttaacggggaagaacctcttgtat 5434928  T
Q  183 cttggaaggatatacgcttatgaggcggataaaat 217  Q
    | ||  || |||| ||||||||||| ||| |||||    
T  5434927 cctgacagaatatgcgcttatgaggtggaaaaaat 5434893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 15569565 - 15569650
Alignment:
Q  130 gagttgttctgtcaccttcagttatgattcataacggggaagaac-tgttgtatcttggaaggatatacgcttatgaggcggataaa 215  Q
    ||||||||||||||||| | | ||||||||||| | | ||||||| ||||||||| ||| |||||||  ||||||||||||||||||    
T  15569565 gagttgttctgtcacct-ctgatatgattcatatcagagaagaacctgttgtatcctgggaggatatgtgcttatgaggcggataaa 15569650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 6667841 - 6667732
Alignment:
Q  127 tttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaagga 226  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||| |    
T  6667841 tttgagctgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaa 6667742  T
Q  227 cagtaactat 236  Q
    |||| |||||    
T  6667741 cagtgactat 6667732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 13010697 - 13010546
Alignment:
Q  84 tattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatc 183  Q
    ||||||| || |||||||||||| |   ||||| ||||||   |||||||||||||||||| | | |||||||||| |||||| ||||||||||| ||||    
T  13010697 tattgagtttttgggttacatcttctgatatctctgagatatatttgagttgttctgtcacatcc-gttatgattcgtaacggagaagaactgttatatc 13010599  T
Q  184 ttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
     | | ||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  13010598 ctaggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactat 13010546  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 6671507 - 6671404
Alignment:
Q  127 tttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaagga 226  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||| |      |||||||||||||| ||||||||    
T  6671507 tttgagctgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgc------gaggcggataaaatcctcaagga 6671414  T
Q  227 cagtaactat 236  Q
    | || |||||    
T  6671413 cggtgactat 6671404  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 44643451 - 44643556
Alignment:
Q  130 gagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacag 229  Q
    |||||||||||||| ||   ||||||||||||| |||||||||||||||||||| | | ||||||| ||||||||||||||||| || ||| ||||||||    
T  44643451 gagttgttctgtcatctctggttatgattcatatcggggaagaactgttgtatcctaggaggatatgcgcttatgaggcggatagaa-tctgaaggacag 44643549  T
Q  230 taactat 236  Q
    | |||||    
T  44643550 tgactat 44643556  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 895463 - 895547
Alignment:
Q  152 tatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    |||||||||||   |||||||||| ||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  895463 tatgattcatattagggaagaacttttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactat 895547  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 20058294 - 20058180
Alignment:
Q  12 acccacatacatactctctctcannnnnnnattatgtgttcctctaaacacaatcattttctttcatctaagt-attgagcttctgggttacatctccga 110  Q
    |||||||||||||||||||||||        ||||||||| ||||||||||||| ||||||| ||||| || | |||||| |||| |||||||||||||     
T  20058294 acccacatacatactctctctcact------ttatgtgtttctctaaacacaattattttctctcatccaaattattgagtttctaggttacatctccgg 20058201  T
Q  111 ttatctttgagattattttga 131  Q
    ||||||||  |||||||||||    
T  20058200 ttatctttatgattattttga 20058180  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 20058177 - 20058116
Alignment:
Q  175 tgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
    ||||||||| ||||||||||  |||| |||||||||||||||| |||||||||||| |||||    
T  20058177 tgttgtatcgtggaaggatacgcgctaatgaggcggataaaatcctcaaggacagtgactat 20058116  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 4747190 - 4747264
Alignment:
Q  131 agttgttctgtcaccttcagttatgattcataacggggaagaac-tgttgtatcttggaaggatatacgcttatgagg 207  Q
    ||||||||||||||||   | |||||||||||   | ||||||| ||||||||||||| |||||||||||||||||||    
T  4747190 agttgttctgtcacct---gatatgattcatacaagcgaagaacctgttgtatcttgggaggatatacgcttatgagg 4747264  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 31767565 - 31767481
Alignment:
Q  131 agttgttctgtcaccttcagttatgattcataacggggaagaac-tgttgtatcttggaaggatatacgcttatgaggcggataaa 215  Q
    |||||||||||||||| | | | ||||||||| | ||||||||| ||||||||| | | |||||||  ||||||||||||||||||    
T  31767565 agttgttctgtcacct-ctgatgtgattcatatcagggaagaacatgttgtatcctaggaggatatgtgcttatgaggcggataaa 31767481  T

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Target: scaffold0014 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 82549 - 82726
Alignment:
Q  61 acaatcattttctttcatctaag-tattgagctt-ctgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgatt 158  Q
    ||||||||||||| ||||| ||  ||||||| || ||||||| ||||||    |||||||||||| | |||||| ||||||||||| | | | |||||||    
T  82549 acaatcattttctctcatccaaaatattgaggtttctgggttgcatctcatgatatctttgagataaatttgagatgttctgtcacatccggctatgatt 82648  T
Q  159 cataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagtaactat 236  Q
     |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||| ||| |||||    
T  82649 tataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactat 82726  T

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Target: scaffold0028 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 110120 - 110225
Alignment:
Q  130 gagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacag 229  Q
    ||||||||||||||||| | |  |||||||||| | | |||||||||||||||||||| ||||||| || |||||||||||||||||| |||||||||||    
T  110120 gagttgttctgtcacct-ctgacatgattcatatcagcgaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacag 110218  T
Q  230 taactat 236  Q
    | |||||    
T  110219 tgactat 110225  T

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Target: scaffold0028; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 127699 - 127804
Alignment:
Q  130 gagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacag 229  Q
    ||||||||||||||||| | |  |||||||||| | |||||||||||||||||| ||| ||||||| || || ||||||||||||||| |||||||||||    
T  127699 gagttgttctgtcacct-ctgacatgattcatatcagggaagaactgttgtatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacag 127797  T
Q  230 taactat 236  Q
    | |||||    
T  127798 tgactat 127804  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 11634371 - 11634190
Alignment:
Q  48 tgttcctctaaacacaatcattttctttcatctaagtattgagcttctgggttacatctccgattatctttgagattattttgagttgttctgtcacctt 147  Q
    |||| ||||| ||||||| ||||||| ||||| || ||||||| ||||| ||| |||||    |||| ||| |||| | ||||||||||| ||| ||||     
T  11634371 tgtttctctatacacaattattttctatcatcaaaatattgagtttctgagttgcatcttatgttattttt-agataaatttgagttgttgtgttacctg 11634273  T
Q  148 cagttatgattcataacggggaagaac-tgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacag 229  Q
    |||||||||||||||||||||||| || ||||||||| ||| ||||||| || ||| |||| ||||||||| |||||| ||||    
T  11634272 cagttatgattcataacggggaaggacatgttgtatcctgggaggatatgcgtttacgaggtggataaaatcctcaagaacag 11634190  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 26445191 - 26445127
Alignment:
Q  152 tatgattcataacggggaagaac-tgttgtatcttggaaggatatacgcttatgaggcggataaa 215  Q
    ||||||||||| | ||||||||| ||||||||||||  |||||||||| ||||||||||||||||    
T  26445191 tatgattcatatcagggaagaacatgttgtatcttgacaggatatacgattatgaggcggataaa 26445127  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 19930188 - 19930069
Alignment:
Q  95 tgggttacatctccgattatctttgagattattttgagttgttctgtcaccttcagttatgattcataacggggaagaac-tgttgtatcttggaaggat 193  Q
    ||||||||||||||   ||||||||||||   ||  ||||||||| |||||| | | | ||||||||  | ||||||||| |||||||||| ||| ||||    
T  19930188 tgggttacatctcctgctatctttgagatagattcaagttgttctatcacct-ctgatgtgattcatctcagggaagaacatgttgtatctggga-ggat 19930091  T
Q  194 atacgcttatgaggcggataaa 215  Q
    || |||||||||||||||||||    
T  19930090 atgcgcttatgaggcggataaa 19930069  T

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Target: scaffold0076 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 6877 - 6773
Alignment:
Q  131 agttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcttggaaggatatacgcttatgaggcggataaaattctcaaggacagt 230  Q
    ||||||||||||| || | | ||||||||||| | ||||| |||||||||||| ||||||||||| | ||||||||||||||||||| ||||| ||||||    
T  6877 agttgttctgtcatct-ctgatatgattcatatcagggaaaaactgttgtatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacagt 6779  T
Q  231 aactat 236  Q
     |||||    
T  6778 gactat 6773  T

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