View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14464_low_43 (Length: 239)
Name: NF14464_low_43
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14464_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 53881623 - 53881707
Alignment:
| Q |
18 |
atggacttcacttatatataccattaaaatggaaatgtcattgacattgaccaatctaattataacacatacatcaattcaatta |
102 |
Q |
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| T |
53881623 |
atggacttcacttatatataccattaaaatggaaatgtcattgacattgaccaatccaattataataaatacatcaattcaatta |
53881707 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 53887737 - 53887821
Alignment:
| Q |
18 |
atggacttcacttatatataccattaaaatggaaatgtcattgacattgaccaatctaattataacacatacatcaattcaatta |
102 |
Q |
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| T |
53887737 |
atggacttcacttatatataccattaaaatggaaatgtcattgacattgaccaatccaattataataaatacatcaattcaatta |
53887821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 53881739 - 53881828
Alignment:
| Q |
134 |
atgttcaaaaaatttatattaagtgtagcacgatgttacacttaaatagaccaatgtcatctgacattatgtcacacaattgacatcctat |
224 |
Q |
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| T |
53881739 |
atgttcaaaaaatttatattaagtgtagcacggtgttaca-ttaaatggaccaatgtcatctgatattatgtcacacaattgacatcctat |
53881828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 53887853 - 53887942
Alignment:
| Q |
134 |
atgttcaaaaaatttatattaagtgtagcacgatgttacacttaaatagaccaatgtcatctgacattatgtcacacaattgacatcctat |
224 |
Q |
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| T |
53887853 |
atgttcaaaaaatttatattaagtgtagcacggtgttaca-ttaaatggaccaatgtcatctgatattatgtcacacaattgacatcctat |
53887942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 434241 - 434286
Alignment:
| Q |
54 |
gtcattgacattgaccaatctaattataacacatacatcaattcaa |
99 |
Q |
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| T |
434241 |
gtcactgatattgaccaatctaattataacacataaatcaattcaa |
434286 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 30244874 - 30244823
Alignment:
| Q |
48 |
ggaaatgtcattgacattgaccaatctaattataacacatacatcaattcaa |
99 |
Q |
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| T |
30244874 |
ggaaatgtcattgacattgatcaatctaattgtgacacataagtcaattcaa |
30244823 |
T |
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